ec2reaction: Convert KEGG enzyme IDs to KEGG reaction IDs.

In ecell/transomics2cytoscape: A tool set for 3D Trans-Omic network visualization with Cytoscape

Convert KEGG enzyme IDs to KEGG reaction IDs.

Description

Convert a EC number column to a KEGG reaction ID column

Usage

ec2reaction(tsvFilePath, columnIndex, outputFilename)

Arguments

tsvFilePath	Path of a TSV file with column of EC number
columnIndex	Index number of the column with the EC number you want to convert
outputFilename	The output file name

Value

None

Author(s)

Kozo Nishida

Examples

## Not run: 
layer3to2 <- system.file("extdata/usecase1", "allosteric_ecnumber.tsv",
    package = "transomics2cytoscape")
ec2reaction(layer3to2, 6, "allosteric_ec2rea.tsv")

## End(Not run)

ecell/transomics2cytoscape documentation built on Nov. 3, 2024, 9:21 p.m.