agglomerated_to_phyloseq: Convert an agglomerated dataframe to a phyloseq object.
In eclarke/metaglomr: Tools for tidy metagenomics
Description
Convert an agglomerated dataframe to a phyloseq object.
Usage
1
2
agglomerated_to_phyloseq(agg, sample_col, otu_col, count_col, sample_metadata,
tax_ranks)
Arguments
agg
the agglomerated dataframe
sample_col
the name of the sample id column in agg
otu_col
the name of the otu id column in agg
count_col
the unquoted name of the counts column in agg
sample_metadata
unquoted names of sample metadata
tax_ranks
unquoted names of taxonomic ranks (i.e. Kingdom:Species)
eclarke/metaglomr documentation built on May 30, 2019, 12:46 p.m.
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Description
Convert an agglomerated dataframe to a phyloseq object.
Usage
1 2 | agglomerated_to_phyloseq(agg, sample_col, otu_col, count_col, sample_metadata,
tax_ranks)
|
Arguments
agg |
the agglomerated dataframe |
sample_col |
the name of the sample id column in agg |
otu_col |
the name of the otu id column in agg |
count_col |
the unquoted name of the counts column in agg |
sample_metadata |
unquoted names of sample metadata |
tax_ranks |
unquoted names of taxonomic ranks (i.e. Kingdom:Species) |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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