phyloseq_to_agglomerated: Convert a phyloseq object to an agglomerated dataframe.
In eclarke/metaglomr: Tools for tidy metagenomics
Description
Convert a phyloseq object to an agglomerated dataframe.
Usage
1
2
phyloseq_to_agglomerated(ps, sample_col, otu_col = "otu_id",
count_col = "count")
Arguments
ps
a phyloseq object
sample_col
the sample_data() column corresponding to rownames(otu_table()), as a string
otu_col
the desired name of the otu id column
count_col
the desired name of the count column
eclarke/metaglomr documentation built on May 30, 2019, 12:46 p.m.
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Description
Convert a phyloseq object to an agglomerated dataframe.
Usage
1 2 | phyloseq_to_agglomerated(ps, sample_col, otu_col = "otu_id",
count_col = "count")
|
Arguments
ps |
a phyloseq object |
sample_col |
the sample_data() column corresponding to rownames(otu_table()), as a string |
otu_col |
the desired name of the otu id column |
count_col |
the desired name of the count column |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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