Files in ecohealthalliance/eidith

Data access and analytical tools for the PREDICT EIDITH database

.Rbuildignore

.gitignore

.travis.yml

CONDUCT.md CONTRIBUTING.md

DESCRIPTION

LICENSE

LICENSE.md

Makefile

NAMESPACE

R/api_calls.R R/auth.R R/contact.R R/database.R R/eidith.R R/fasta.R R/helper_functions.R R/import_local_database.R R/metadata.R R/mock_data_calls.R R/onload.R R/process.R R/status_checks.R

R/sysdata.rda

R/tables.R R/tables_conn.R R/utils.R README.md

_pkgdown.yml

appveyor.yml

codecov.yml

data-raw/ed2_metadata.csv

data-raw/ed_lab_shortnames.csv

data-raw/ed_manual_species_lookup.csv

data-raw/ed_metadata.csv

data-raw/ed_taxagroups.csv

data-raw/eidith_itis_lookup.csv

data-raw/fix-mock-data.R

data-raw/incomplete_taxa.csv

data-raw/metadata_newendpoint_readme.md data-raw/metadata_update_readme.md

data-raw/mock_animals.csv

data-raw/mock_events.csv

data-raw/mock_specimens.csv

data-raw/mock_test_specimen_ids.csv

data-raw/mock_tests.csv

data-raw/mock_testspecimen.csv

data-raw/mock_viruses.csv

data-raw/preprocess_data.R

docs/.DS_Store

docs/CONDUCT.html

docs/CONTRIBUTING.html

docs/LICENSE-text.html

docs/LICENSE.html

docs/articles/data_structure.R

docs/articles/data_structure.html

docs/articles/data_structure.md

docs/articles/data_structure_files/figure-html/7-1.png

docs/articles/eidith.R

docs/articles/eidith.html

docs/articles/eidith.md docs/articles/eidith_API.R

docs/articles/eidith_API.html

docs/articles/eidith_API.md docs/articles/eidith_r_training.pdf docs/articles/fasta_walkthrough.R

docs/articles/fasta_walkthrough.html

docs/articles/fasta_walkthrough.md

docs/articles/figure/7-1.png

docs/articles/index.html

docs/articles/multi_response_fields.html

docs/articles/multi_response_fields_files/figure-html/longplot-1.png

docs/articles/multi_response_fields_files/figure-html/widegraph-1.png

docs/articles/p2_data_structure.html

docs/articles/p2_data_structure_files/figure-html/5a-1.png

docs/articles/p2_data_structure_files/figure-html/5b-1.png

docs/articles/p2_data_structure_files/figure-html/5c-1.png

docs/articles/preprocessing.R

docs/articles/preprocessing.html

docs/articles/preprocessing.md

docs/authors.html

docs/docsearch.css

docs/docsearch.js

docs/docsearch.json

docs/index.html

docs/inst/images/README-eidith-logo-2014.png

docs/inst/images/README-predictfooter.png

docs/inst/images/tables.png

docs/jquery.sticky-kit.min.js

docs/link.svg

docs/news/index.html

docs/pkgdown.css

docs/pkgdown.js

docs/pkgdown.yml

docs/reference/ed2_expand_long.html

docs/reference/ed2_expand_wide.html

docs/reference/ed2_metadata.html

docs/reference/ed2_table.html

docs/reference/ed_auth.html

docs/reference/ed_contact.html

docs/reference/ed_db_check_status.html

docs/reference/ed_db_delete.html

docs/reference/ed_db_detailed_status.html

docs/reference/ed_db_download.html

docs/reference/ed_db_export.html

docs/reference/ed_db_status.html

docs/reference/ed_db_updates.html

docs/reference/ed_detailed_db_status.html

docs/reference/ed_fasta.html

docs/reference/ed_get.html

docs/reference/ed_metadata.html

docs/reference/ed_mock.html

docs/reference/ed_process.html

docs/reference/ed_table.html

docs/reference/ed_tables_conn.html

docs/reference/eidith.html

docs/reference/endpoints.html

docs/reference/index.html

docs/sitemap.xml

eidith.Rproj

inst/backup/.gitignore

inst/backup/01_backup.R inst/backup/02_filtering_dbs.R

inst/ed2_conn.csv

inst/images/README-eidith-logo-2014.png

inst/images/README-predictfooter.png

inst/images/README-primary-tables.png

inst/images/metadata_example.png

inst/images/tables.png

inst/images/total_schema.jpg

inst/queries/.gitignore

inst/queries/country-filter.R inst/queries/p1.R inst/queries/sequences-malaysia-thailand.R man/countries.Rd man/ed2_expand_long.Rd man/ed2_expand_wide.Rd

man/ed2_metadata.Rd

man/ed2_table.Rd man/ed_auth.Rd man/ed_contact.Rd man/ed_db_delete.Rd man/ed_db_detailed_status.Rd man/ed_db_download.Rd man/ed_db_export.Rd man/ed_fasta.Rd

man/ed_metadata.Rd

man/ed_mock.Rd man/ed_process.Rd man/ed_table.Rd man/ed_tables_conn.Rd man/eidith.Rd man/endpoints.Rd man/import_local_db.Rd tests/testthat.R tests/testthat/helper-00-setup.R tests/testthat/test-01-web-api.R tests/testthat/test-02-tables.R tests/testthat/test-03-lookup-functions.R vignettes/data_structure.Rmd vignettes/data_structure.md vignettes/eidith.Rmd vignettes/eidith.md vignettes/eidith_API.Rmd vignettes/eidith_API.md vignettes/fasta_walkthrough.Rmd vignettes/fasta_walkthrough.md

vignettes/figure/7-1.png

vignettes/multi_response_fields.rmd vignettes/p2_data_structure.Rmd vignettes/preprocessing.Rmd vignettes/preprocessing.md

ecohealthalliance/eidith documentation built on Aug. 30, 2022, 7:45 a.m.