calcInitVals: Calculate initial values for MCMC.
In eeholmes/DM: Dynamic Model
Description
Usage
Arguments
Value
Description
calcInitVals computes initial values for MCMC algorithm used to compute the posterior distribution for the model parameters.
Usage
1
calcInitVals(mlEst, dat, input, bdat, sims = NULL)
Arguments
mlEst
The maximum likelihood estimate for the four SR parameters: log(prod), log(capacity), log(msCoef), log(flowCoef). Output from findOptimum().
dat
data from the A & P file
input
a list with the other values needed for a DM run.
The following are examples naturalMort, analysisType = "DM", SRfunction, includeMarineSurvival, includeFlow
bdat
The in a format appropriate for JAGS implementation of the model.
sims
MCMC simulations from a previous fit. If sims=NULL all initial values are based on estimates derived from the data.
Value
A list with initial values for prod (production), logCap (log capacity),
msCoef (the coefficient for marine survival),
flowCoef (the coeficient for stream survival), rMu and maturationRate_logit.
eeholmes/DM documentation built on May 26, 2019, 3:36 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value
Description
calcInitVals computes initial values for MCMC algorithm used to compute the posterior distribution for the model parameters.
Usage
1 | calcInitVals(mlEst, dat, input, bdat, sims = NULL)
|
Arguments
mlEst |
The maximum likelihood estimate for the four SR parameters: log(prod), log(capacity), log(msCoef), log(flowCoef). Output from findOptimum(). |
dat |
data from the A & P file |
input |
a list with the other values needed for a DM run. The following are examples naturalMort, analysisType = "DM", SRfunction, includeMarineSurvival, includeFlow |
bdat |
The in a format appropriate for JAGS implementation of the model. |
sims |
MCMC simulations from a previous fit. If sims=NULL all initial values are based on estimates derived from the data. |
Value
A list with initial values for prod (production), logCap (log capacity), msCoef (the coefficient for marine survival), flowCoef (the coeficient for stream survival), rMu and maturationRate_logit.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.