plotResults: Create plots from DM runs

In eeholmes/DM: Dynamic Model

Description

Create several plots based on the DM model runs. This calls the functions for various plots: plotPriors, plotPosteriors, plotAgeComp, plotCoefs

Usage

plotResults(dmObj, plotType = c("a.and.p.data", "priors", "SR", "recruits",
  "covariates", "harvest", "EscData", "EscAndAge", "escapement", "barPlot",
  "ageComp"), plotDest = "default", plotName = "tmp")

Arguments

dmObj	a saved DM object (list) from runModel() with the objects "input","dat","result", and "tDat"
plotType	The plots and order in which to make them covariates harvest EscData EscAndAge escapement SR recruits recruit residuals, recruits/spawners #and effective harvest on recruits barPlot a bar plot showing spawners and recruits broken down by pHOS and harvested ageComp priors Priors used in the DM model a.and.p.data Raw data from the A and P input file.
plotDest	Plot destination. Can be "screen", "png", "default", "none". If "screen", separate graphics windows are opened. If "none", nothing is plotted but the figure captions are returned.
plotName	prefix to apply to filename for generated plots if plotDest="png"

Value

The plot is saved to a file or plotted to screen or default device depending on plotDest. A vector of plot captions is returned invisibly.

eeholmes/DM documentation built on May 26, 2019, 3:36 p.m.