gset_list_from_gmt: Retrieve Gene Sets from GMT-format File
In egeulgen/pathfindR: Enrichment Analysis Utilizing Active Subnetworks
View source: R/data_generation.R
gset_list_from_gmt R Documentation
Retrieve Gene Sets from GMT-format File
Description
Retrieve Gene Sets from GMT-format File
Usage
gset_list_from_gmt(path2gmt, descriptions_idx = 2)
Arguments
path2gmt
path to the gmt file
descriptions_idx
index for descriptions (default = 2)
Value
list containing 2 elements:
gene_sets - A list containing the genes involved in each gene set
descriptions - A named vector containing the descriptions for each gene set
egeulgen/pathfindR documentation built on Feb. 1, 2024, 4:34 a.m.
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View source: R/data_generation.R
| gset_list_from_gmt | R Documentation |
Retrieve Gene Sets from GMT-format File
Description
Retrieve Gene Sets from GMT-format File
Usage
gset_list_from_gmt(path2gmt, descriptions_idx = 2)
Arguments
path2gmt |
path to the gmt file |
descriptions_idx |
index for descriptions (default = 2) |
Value
list containing 2 elements:
gene_sets - A list containing the genes involved in each gene set
descriptions - A named vector containing the descriptions for each gene set
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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