Files in ehfhcrc/ImmSig2
Streamlined package to demonstrate HIPC ImmuneSigatures work using ImmuneSpace Data
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
OrigCode/CHI_HAICalcs/RHaiFuncs_sdy404/discretize.r
OrigCode/CHI_HAICalcs/RHaiFuncs_sdy404/inv_normal_transform.r
OrigCode/CHI_HAICalcs/RHaiFuncs_sdy404/plot_size_bubbles.r
OrigCode/CHI_HAICalcs/chi_data/day0_d0_d70match_08_2013_raw.txt
OrigCode/CHI_HAICalcs/chi_data/day70_d0_d70match_08_2013_raw.txt
OrigCode/CHI_HAICalcs/chi_data/flow_coh2_day0.log.agrcorr.txt
OrigCode/CHI_HAICalcs/chi_data/flu-demographics-db-export-coh2.txt
OrigCode/CHI_HAICalcs/chi_titer_calc_step1.m
OrigCode/CHI_HAICalcs/chi_titer_calc_step2.m
OrigCode/CHI_HAICalcs/compute_titer_fc.m
OrigCode/CHI_HAICalcs/decorrelate_by_bin.m
OrigCode/CHI_HAICalcs/decorrelate_by_bin_idx.m
OrigCode/CHI_HAICalcs/discretize.m
OrigCode/CHI_HAICalcs/inv_normal_transform2_tied.m
OrigCode/CHI_HAICalcs/inv_normal_transform_tied.m
OrigCode/CHI_HAICalcs/mad_standardize.m
OrigCode/CHI_HAICalcs/results/CHI_170213.mat
OrigCode/CHI_HAICalcs/results/CHI_fc_max_ivt_vs_d0_norm_max_after.png
OrigCode/CHI_HAICalcs/results/CHI_fc_max_ivt_vs_d0_norm_max_before.png
OrigCode/CHI_HAICalcs/results/SDY80_young_hai_titer_table.txt
OrigCode/CHI_HAICalcs/robust_med.m
OrigCode/CHI_HAICalcs/titer_process_SDY404.r
OrigCode/STANFORD_SingleGeneMetaAnalysis/hipc_multiCohortAnalysis_script_paper.R
OrigCode/YALE_GECalcs/makeGEmatrix.R
OrigCode/YALE_ModuleMetaAnalysis/HIPCMetaModuleAnalysis_v2.R
OrigCode/YALE_ModuleMetaAnalysis/correlation_combinePDF_OldYoung.R
OrigCode/YALE_ModuleMetaAnalysis/datasets.R
OrigCode/YALE_ModuleMetaAnalysis/getSDY.R
OrigCode/YALE_ModuleMetaAnalysis/getSDY_swaps.R
OrigCode/YALE_ModuleMetaAnalysis/moduleActivity.TXT
OrigCode/sdy80_hai_comp/SDY80_IDmap.tsv
OrigCode/sdy80_hai_comp/sdy80_hai_compwk.R
OrigCode/sdy80_hai_comp/sdy80_hai_compwk.Rmd
OrigCode/sdy80_hai_comp/sdy80_hai_compwk.html
R/Meta_Analysis_Demo.R
R/Single_Gene_Analysis.R
R/adjust_GE.R
R/adjust_hai.R
R/get_GE.R
R/vignetteImports.R
README.md
data/SDY400_IDmap.rda
data/SDY404_IDmap.rda
data/SDY63_IDmap.rda
data/SDY63_anno_tbl.rda
data/SDY80_IDmap.rda
data/SDY80_orig_anno.rda
data/SDY80_rawtiterdata_v2.rda
data/biosmpl2sub.rda
data/ens_table.rda
data/geneSetDB.rda
data/msng400genes.rda
data/sdy212_exprMx.rda
data/sdy400_exprMx.rda
data/sdy400_exprMxOrig.rda
data/sdy404_exprMx.rda
data/sdy63_exprMx.rda
data/sdy67_exprMx.rda
data/sdy80_exprMx.rda
man/adjust_GE.Rd
man/adjust_hai.Rd
man/arithMean_comb_validate.Rd
man/getGE.Rd
man/initLibs.Rd
man/makeGEM.Rd
man/meta_analysis.Rd
man/singleGeneAnalysis.Rd
man/swapCols.Rd
vignettes/ImmSig_Pipeline_Demo.Rmd
vignettes/fig1.png
