mm_Phenotype: Get Phenotypes

View source: R/plotting.R

mm_PhenotypeR Documentation

Get Phenotypes

Description

Apply PCA and Hierarchical Clustering to infer phenotypes

Usage

mm_Phenotype(A, maxPC = 10, k = NULL)

Arguments

A

an array to be analyzed. No missing data allowed (see mm_FillMissing)

maxPC

Maximum number of PCs to use in analysis. The default (10) is entirely arbitrary. 10 may be too many shape variables to consider, or it may be far from enough.

k

The number of groups for which phenotypes will be drawn. If NULL (default) Diagnostic plots will be drawn to help gauge appropriate k


ehrlichd/moRphomenses documentation built on Aug. 6, 2022, 2:32 a.m.