Files in elisvb/CCAM
Censored Catch Assessment Model
.Rbuildignore
.gitignore
CCAM.Rproj
DESCRIPTION
NAMESPACE
R/conf.R
R/forecast.R
R/ie.R
R/init.R
R/methods.R
R/mp.R
R/mse.R
R/plot.R
R/reading.R
R/retro.R
R/run.R
R/supp.R
R/tables.R
R/text.R
R/transf.R
README.md
data/canmackConf.Rdata
data/canmackData.Rdata
data/canmackParameters.Rdata
example/canmack/cn.dat
example/canmack/ct.dat
example/canmack/ctForeign.dat
example/canmack/ctUSA.dat
example/canmack/cw.dat
example/canmack/dw.dat
example/canmack/env.dat
example/canmack/lf.dat
example/canmack/lw.dat
example/canmack/mo.dat
example/canmack/nm.dat
example/canmack/pf.dat
example/canmack/pm.dat
example/canmack/script.R
example/canmack/survey.dat
example/canmack/sw.dat
example/canmack/sw0.dat
inst/CITATION
inst/include/CCAM.hpp
inst/include/define.hpp
inst/include/derived.hpp
inst/include/f.hpp
inst/include/n.hpp
inst/include/obs.hpp
inst/include/predn.hpp
inst/include/predobs.hpp
man/IEconstant.Rd
man/IEdep0025.Rd
man/IEdep2550.Rd
man/IEdep5075.Rd
man/IEdep75100.Rd
man/IEdepcopy.Rd
man/IEindep1000.Rd
man/IEindep2000.Rd
man/IEindep2019.Rd
man/IEindep3000.Rd
man/IEindep4000.Rd
man/IEindep4800.Rd
man/IEindep500.Rd
man/IEindep6000.Rd
man/IEindep7200.Rd
man/IEindepdecr.Rd
man/IEindepdecrsteep.Rd
man/IEplot.Rd
man/MPeggcomplex.Rd
man/MPeggcomplex0.Rd
man/MPeggcomplex10000.Rd
man/MPeggcomplex15000.Rd
man/MPeggcomplex2000.Rd
man/MPeggcomplex4000.Rd
man/MPeggcomplex6000.Rd
man/MPeggcomplex8000.Rd
man/MPeggcomplexinterim.Rd
man/MPeggcomplexramp.Rd
man/MPeggsimple.Rd
man/MSEplot.Rd
man/avail.Rd
man/bubble.Rd
man/c.ccam.Rd
man/c.ccamforecast.Rd
man/canmackConf.Rd
man/canmackData.Rd
man/canmackParameters.Rd
man/catchplot.Rd
man/catchtable.Rd
man/ccam.fit.Rd
man/clean.void.catches.Rd
man/coef.ccam.Rd
man/copy.Rd
man/crl.Rd
man/cumsum.bounded.Rd
man/defcon.Rd
man/defpar.Rd
man/diamondplot.Rd
man/expplot.Rd
man/exptable.Rd
man/extract.Rd
man/faytable.Rd
man/fbarplot.Rd
man/fbartable.Rd
man/fitfromweb.Rd
man/fitplot.Rd
man/fleet3.Rd
man/fleet6.Rd
man/force.fit.Rd
man/forecast.Rd
man/foreplot.Rd
man/getLowerBounds.Rd
man/getUpperBounds.Rd
man/gmean.Rd
man/heat.Rd
man/invcrl.Rd
man/invlogit.Rd
man/is.whole.positive.number.Rd
man/jit.Rd
man/jittable.Rd
man/kobeplot.Rd
man/leaveout.Rd
man/loadConf.Rd
man/logLik.ccam.Rd
man/logit.Rd
man/modelDescription.Rd
man/modelVersionInfo.Rd
man/modeltable.Rd
man/mohn.Rd
man/newobs.Rd
man/nobs.ccam.Rd
man/nscodConf.Rd
man/nscodData.Rd
man/nscodParameters.Rd
man/ntable.Rd
man/onLoad.Rd
man/parplot.Rd
man/partable.Rd
man/peplot.Rd
man/plot.ccam.Rd
man/plot.ccamforecast.Rd
man/plot.ccamres.Rd
man/plot.ccamset.Rd
man/plot.ccamypr.Rd
man/plot.forecastset.Rd
man/plotit.Rd
man/plotobs.Rd
man/prettymatplot.Rd
man/print.ccam.Rd
man/print.ccamcoef.Rd
man/print.ccamforecast.Rd
man/print.ccamres.Rd
man/print.ccamset.Rd
man/print.ccamypr.Rd
man/procres.Rd
man/prodplot.Rd
man/raw.Rd
man/read.ices.Rd
man/read.surveys.Rd
man/read.table.nowarn.Rd
man/recplot.Rd
man/rectable.Rd
man/reduce.Rd
man/residuals.ccam.Rd
man/resplot.Rd
man/retro.Rd
man/rmvnorm.Rd
man/runwithout.Rd
man/saveConf.Rd
man/savepng.Rd
man/scplot.Rd
man/selplot.Rd
man/seltable.Rd
man/setS.Rd
man/setSeq.Rd
man/setup.ccam.data.Rd
man/simulate.ccam.Rd
man/spay.Rd
man/spya.Rd
man/srplot.Rd
man/ssb0plot.Rd
man/ssb0table.Rd
man/ssbplot.Rd
man/ssbtable.Rd
man/stepconf.Rd
man/stepdat.Rd
man/steppar.Rd
man/stick.Rd
man/summary.ccam.Rd
man/surveyplot.Rd
man/tableit.Rd
man/tableset.Rd
man/tsbplot.Rd
man/tsbtable.Rd
man/ypr.Rd
src/CCAM.cpp
