defcon: Setup basic minimal configuration for ccam assessment

In elisvb/CCAM: Censored Catch Assessment Model

Setup basic minimal configuration for ccam assessment

Description

Setup basic minimal configuration for ccam assessment

Usage

defcon(dat)

Arguments

dat	ccam data object

Details

...

Value

a list containing

minAge	minimum age
maxAge	maximum age
maxAgePlusGroup	plus group (0 or 1)
keySel	selectivity structure
keyLogFpar	survey catchability
keyQpow	Qpow structure
keyVarF	F variance structure
keyVarLogN	N variance structure
keyVarObs	observation variance structure
obsCorStruct	correlation structure if MVN observation error
keyCorObs	correlation if MVN observation error
stockRecruitmentModelCode	0: RW, 1: ricker, 2: BH, 3: mean
noScaledYears	set to zero as a placeholder here.
keyScaledYears	a scalar set to zero as a placeholder here.
keyParScaledYA	an array set to zero as a placeholder here.
fbarRange	Range of ages over which Fbar should be taken
obsLikelihoodFlag	A vector with an element for each fleet. "LN","ALN" or for fleetType 3 "CE" or "RO"
fixVarToWeight	a scalar set to zero as a placeholder here.

elisvb/CCAM documentation built on March 13, 2023, 6:55 a.m.