plot_yt_tax: General 16S Abundance Plot This function reads uparse output...
In elittmann/erictools:
Usage
1
2
plot_yt_tax(phylo, pctseqs = T, threshold = 0.1, taxtextsize = 3,
labeltextsize = 12)
Arguments
phylo
phyloseq object (can use read_uparse to get uparse outputs into phyloseq...)
pctseqs
When TRUE will return plots with
\itemthresholdMinimum number of sequences (numseqs) or
\itemtaxtextsizeFont size of labeled taxons
\itemlabeltextsizeFont size of sample labels on the x axis
General 16S Abundance Plot
This function reads uparse output files from the specified directory and generates a 16S abundance plot at the species level
elittmann/erictools documentation built on Feb. 2, 2020, 11:01 p.m.
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Usage
1 2 | plot_yt_tax(phylo, pctseqs = T, threshold = 0.1, taxtextsize = 3,
labeltextsize = 12)
|
Arguments
phylo |
phyloseq object (can use read_uparse to get uparse outputs into phyloseq...) |
pctseqs |
When TRUE will return plots with \itemthresholdMinimum number of sequences (numseqs) or \itemtaxtextsizeFont size of labeled taxons \itemlabeltextsizeFont size of sample labels on the x axis General 16S Abundance Plot This function reads uparse output files from the specified directory and generates a 16S abundance plot at the species level |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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