read_humann2: Humann2 Output Read In Read in all output files for any...
In elittmann/erictools:
Description
Humann2 Output Read In
Read in all output files for any number of samples into a list of dataframes, containing gene abundances, pathway abundances, and pathway coverage for each sample
Output information:
data[[1]] = genefam (gene family abundance table)
data[[2]] = pathabu (pathway abundance table)
data[[3]] = pathcov (pathway coverage table)
Requires pbapply and stringr libraries
Usage
1
read_humann2(file_dir)
Examples
1
2
a <- "/Volumes/castoricenter/Eric.Littmann/U01/Processed_Data/Humann2/"
data <- humann2_readin(a)
elittmann/erictools documentation built on Feb. 2, 2020, 11:01 p.m.
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Description
Humann2 Output Read In Read in all output files for any number of samples into a list of dataframes, containing gene abundances, pathway abundances, and pathway coverage for each sample Output information: data[[1]] = genefam (gene family abundance table) data[[2]] = pathabu (pathway abundance table) data[[3]] = pathcov (pathway coverage table) Requires pbapply and stringr libraries
Usage
1 | read_humann2(file_dir)
|
Examples
1 2 | a <- "/Volumes/castoricenter/Eric.Littmann/U01/Processed_Data/Humann2/"
data <- humann2_readin(a)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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