RunSubjunct: RunSubjunct a wrapper to the 'subjuct' function

In elmerfer/Aligners:

RunSubjunct a wrapper to the subjuct function

Description

RunSubjunct a wrapper to the subjuct function

Usage

RunSubjunct(sbjFile, species, version, nThreads)

Arguments

sbjFile	string full path to the R1.fastq or or gz file
species	the species you whant to use, it should be stored in your database pls see ShowSpecies
version	the code indicating the genome+annotation pair
nThreads	integer, number of CPUs to be used

Value

the file name of the resulted bam file with an attribute "assemblyVersion" that shows the reference-annotation verision see GetGenomesInDB

elmerfer/Aligners documentation built on May 27, 2023, 5:05 a.m.