API for elmerfer/ArribaR
gene Expression quantification, Gene Fusion detection and Immuno Content Deconvolution by STAR and ARRIBA softwares
| Global functions | |
|---|---|
| .FusionsPlot | Source code |
| .InstallArribaGeneFusion | Source code |
| .InstallArribaOnGenomeDB | Source code |
| .Mitelman | Source code |
| .OpenConfigFile | Man page Source code |
| .ReadArribaFusionTable | Man page Source code |
| .ReadBamHeader | Man page Source code |
| .ReadCytobandFile | Man page Source code |
| .ReadExonAnnotationFile | Source code |
| .ReadExonAnnotationFile2 | Source code |
| .ReadProteinDomainsFile | Source code |
| .SetThreads | Source code |
| .StatsSTARfile | Man page Source code |
| .panel.gene1 | Source code |
| .panel.gene2 | Source code |
| .panel.par | Source code |
| FusionPlot | Man page |
| GetArribaRTest | Man page Source code |
| GetCounts | Man page Source code |
| GetImmuneContent | Man page Source code |
| InstallArribaR | Man page Source code |
| RunARRIBA | Man page Source code |
| RunAnalysis | Man page Source code |
| RunArriba | Man page Source code |
| RunSTAR | Man page Source code |
| RunSTARforARRIBA | Man page Source code |
| RunSortIndexBam | Man page Source code Source code |
| SearchPanel | Man page Source code |
| addChr | Source code |
| between | Source code |
| drawCircos | Source code |
| drawCoverage | Source code |
| drawCurlyBrace | Source code |
| drawExon | Source code |
| drawIdeogram | Source code |
| drawProteinDomains | Source code |
| drawStrand | Source code |
| drawVerticalGradient | Source code |
| findExons | Source code |
| getDarkColor | Source code |
| removeChr | Source code |
