SearchPanel: SearchPanel This function recover those fusions that were...

In elmerfer/ArribaR: gene Expression quantification, Gene Fusion detection and Immuno Content Deconvolution by STAR and ARRIBA softwares

SearchPanel This function recover those fusions that were discarded by Arriba, but they have at split_read1+spleat_read2+discordant_mates > 0. Low confident fusions

Description

SearchPanel This function recover those fusions that were discarded by Arriba, but they have at split_read1+spleat_read2+discordant_mates > 0. Low confident fusions

Usage

SearchPanel(genePanel, fileFusions, save = T)

Arguments

genePanel	a data frame with the target genes
fileFusions	the tsv discarded file fusions path, it should end in _Fusions_discarded.tsv
save	(logical, default TRUE), if the results would be saved as excel file

elmerfer/ArribaR documentation built on Nov. 14, 2023, 1 p.m.