RunSortIndexBam: runSortIndexBam This function will built the sorted bam file...

In elmerfer/ArribaR: gene Expression quantification, Gene Fusion detection and Immuno Content Deconvolution by STAR and ARRIBA softwares

runSortIndexBam This function will built the sorted bam file and its index.

Description

runSortIndexBam This function will built the sorted bam file and its index.

#' RunSortIndexBam #' This function will built the sorted bam file and its index which are necesary for visualization #' @param sbjBamFile string full path of aligned bam file see RunSTARforARRIBA #' @param remove boolean (default TRUE), if unsorted bam file should be removed or not. #' @export #' @seealso sortBam

Usage

RunSortIndexBam(sbjBamFile, remove = T)

RunSortIndexBam(sbjBamFile, remove = T)

Arguments

sbjBamFile	string full path of aligned bam file see runSTAR
remove	boolean (default TRUE), if unsorted bam file should be removed or not.

See Also

sortBam

elmerfer/ArribaR documentation built on Nov. 14, 2023, 1 p.m.