RunSTAR: RunSTAR This function will run STAR software

In elmerfer/ArribaR: gene Expression quantification, Gene Fusion detection and Immuno Content Deconvolution by STAR and ARRIBA softwares

RunSTAR This function will run STAR software

Description

RunSTAR This function will run STAR software

Usage

RunSTAR(sbjFile, nThreads, assemblyVersion = c("37", "38"))

Arguments

sbjFile	string with the full path and name of the xxxx_1_fastq or gz sequence file. This function only support paired data
nThreads	number of CPUs threads

Author(s)

Elmer A. Fernández

Examples

## Not run: 
test.subject <- GetArribaRTest()
bam.subject <- RunSTAR(test.subject)

## End(Not run)

elmerfer/ArribaR documentation built on Nov. 14, 2023, 1 p.m.