Man pages for elmerfer/ArribaR
gene Expression quantification, Gene Fusion detection and Immuno Content Deconvolution by STAR and ARRIBA softwares
| dot-OpenConfigFile | .OpenConfigFile Internal. save and restore config info |
| dot-ReadArribaFusionTable | .ReadArribaFustionTable Read and format arriba output fusion... |
| dot-ReadBamHeader | .ReadBamHeader |
| dot-ReadCytobandFile | .ReadCytobandFile Internal function. Read cytoband... |
| dot-StatsSTARfile | .StatsSTARfile reads and format the Log-final.out alignement... |
| FusionPlot | FusionPlot This function provides gene fusion visualization |
| GetArribaRTest | GetArribaRTest This function will retrieve the test files... |
| GetCounts | GetCounts it estimate the gene counts wrapping the... |
| GetImmuneContent | GetImmuneContent |
| InstallArribaR | InstallArribaR This function will install the arriba software... |
| RunAnalysis | RunAnalysis |
| RunArriba | #' GetArribaRTest #' This function will retrieve the test... |
| RunARRIBA | RunARRIBA this function will run the gene fusion detection... |
| RunSortIndexBam | runSortIndexBam This function will built the sorted bam file... |
| RunSTAR | RunSTAR This function will run STAR software |
| RunSTARforARRIBA | RunSTARforARRIBA This function will run STAR software based... |
| SearchPanel | SearchPanel This function recover those fusions that were... |
