eMIRNA.Filter.by.Size: eMIRNA Function for filtering sequences according to length

In emarmolsanchez/eMIRNA_Rmodules: eMIRNA: A comprehensive pipeline for discovery and annotation of microRNAs in animal species

Description

eMIRNA.Filter.by.Size Returns a filtered FASTA file according to established thresholds

Usage

eMIRNA.Filter.by.Size(file, prefix, a, b)

Arguments

file	Path to FASTA file to filter. file.
prefix	Desired name for filtered FASTA output.
a	Minimum length threshold to keep sequences. If a = 50, all sequences below 50 nucleotides in length will be removed.
b	Maximum length threshold to keep sequences. If b = 150, all sequences above 150 nucleotides in length will be removed.

Examples

eMIRNA.Filter.by.Size("~/FASTA.fa", "FASTA", 50, 150)

emarmolsanchez/eMIRNA_Rmodules documentation built on May 14, 2019, 5 a.m.