OrthologNetwork: The OG Network Function
In emilyso-99/MicroMetaGraph: MicroMetaGraph: Construction Interaction Networks using Metatranscriptomic Data
Description
Usage
Arguments
Value
View source: R/OrthologNetwork.R
Description
from beginning to end, using the query functions that were done before, this function constructs a protein interaction network
that is orthog specific. Each node is a COG group, with information on the functional annotation and the input proteins present in each ortholog group. there
are lines connecting interaction scores
Usage
1
OrthologNetwork(proteins, benchmark = 0)
Arguments
proteins
A list that contains a sequence of NCBI/Genbank protein ids
benchmark
Set benchmarks for association scores
Value
graph of interaction network
emilyso-99/MicroMetaGraph documentation built on Jan. 1, 2021, 12:18 a.m.
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Description Usage Arguments Value
View source: R/OrthologNetwork.R
Description
from beginning to end, using the query functions that were done before, this function constructs a protein interaction network that is orthog specific. Each node is a COG group, with information on the functional annotation and the input proteins present in each ortholog group. there are lines connecting interaction scores
Usage
1 | OrthologNetwork(proteins, benchmark = 0)
|
Arguments
proteins |
A list that contains a sequence of NCBI/Genbank protein ids |
benchmark |
Set benchmarks for association scores |
Value
graph of interaction network
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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