CogLinker: The Annotation Function

In emilyso-99/MicroMetaGraph: MicroMetaGraph: Construction Interaction Networks using Metatranscriptomic Data

Description

This function, when fed a character vector of ortholog groups, will return the bit scores of the other COG groups in the datasets that it interacts with

Usage

CogLinker(groups, benchmark = 0)

Arguments

groups	A character vector that contains a list of OGs, benchmark for association score
benchmark	The benchmark for association scores

Value

dataframe containing each pair of OGs with its bitscore

Examples

{
CogLinker(c("COG0001","COG0002"),100)
}
"Classifier COG0002 connects with the group COG0001"

emilyso-99/MicroMetaGraph documentation built on Jan. 1, 2021, 12:18 a.m.