GetOrthology: The Get Orthology Function
In emilyso-99/MicroMetaGraph: MicroMetaGraph: Construction Interaction Networks using Metatranscriptomic Data
Description
Usage
Arguments
Value
Examples
Description
This function retrieves the corresponding ortholog groups for the input set of proteins, by retrieving
their ortholog groups and that orthologs members (derived from EGGNOG Database)
Usage
1
GetOrthology(classifiers)
Arguments
classifiers
A list that contains a sequence of protein/genes classifiers
Value
dataframe containing the orthologous groups present in the input
sequence, and their respective ortholog groups
Examples
1
2
3
4
5
6
{
GetOrthology(c("644223.PAS_chr1-1_0187","5270.UM01492.1","51453.JGI55417"))
}
"Protein with ID 644223.PAS_chr1-1_0187 belongs to the group COG5271"
"Protein with ID 5270.UM01492.1 belongs to the group COG0515"
"Protein with ID 51453.JGI55417 belongs to the group COG5245"
emilyso-99/MicroMetaGraph documentation built on Jan. 1, 2021, 12:18 a.m.
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Description Usage Arguments Value Examples
Description
This function retrieves the corresponding ortholog groups for the input set of proteins, by retrieving their ortholog groups and that orthologs members (derived from EGGNOG Database)
Usage
1 | GetOrthology(classifiers)
|
Arguments
classifiers |
A list that contains a sequence of protein/genes classifiers |
Value
dataframe containing the orthologous groups present in the input sequence, and their respective ortholog groups
Examples
1 2 3 4 5 6 | {
GetOrthology(c("644223.PAS_chr1-1_0187","5270.UM01492.1","51453.JGI55417"))
}
"Protein with ID 644223.PAS_chr1-1_0187 belongs to the group COG5271"
"Protein with ID 5270.UM01492.1 belongs to the group COG0515"
"Protein with ID 51453.JGI55417 belongs to the group COG5245"
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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