query: Get protein/gene info associated with the query keywords

In emreg00/guildifyR: GUILDify R

Description

Get protein/gene info associated with the query keywords

Usage

query(keywords, species = "9606", tissue = "all",
  network.source = "BIANA", quote.keywords = T)

Arguments

keywords	Text containing description of a phenotype or list of genes (seperated by ";")
species	Species tax identifier (9606: human, 10090: mouse, etc., see get.species.info method)
tissue	Tissue identifier (all, liver, lung, etc., see get.species.info method)
network.source	Interaction network source (BIANA, STRING, HIPPIE, etc.)
quote.keywords	Quotes the keywords to treat whitespaces as ANDs (e.g., "Muscular Dystrophy")

Value

result.table Data frame containing list of matching proteins/genes and their description

Examples

result.table = query("alzheimer", species="10090", tissue="all", network.source="BIANA")

emreg00/guildifyR documentation built on July 19, 2019, 3:44 p.m.