submit.job: Submit job using the guildifyR query result table

In emreg00/guildifyR: GUILDify R

Description

Submit job using the guildifyR query result table

Usage

submit.job(result.table, species, tissue, network.source,
  scoring.options = list(netcombo = T))

Arguments

species	Species tax identifier (9606: human, 10090: mouse, etc., see get.species.info method)
tissue	Tissue identifier (all, liver, lung, etc., see get.species.info method)
network.source	Interaction network source (BIANA, STRING, HIPPIE, etc.)
scoring.options	Prioritization method options (default NetCombo)
query.table	Data frame contaning information from guildifyR query (user entitiy info, network info, source etc...)

Value

job id

Examples

species="10090"
tissue="all"
network.source="BIANA"
result.table = query("alzheimer", species, tissue, network.source)
#Diamond
scoring.options = list(diamond=T)
#NetScore
scoring.options = list(netscore=T, repetitionSelector=3, iterationSelector=2)
#NetZcore
scoring.options = list(netzcore=T, repetitionZelector=3)
#NetShort
scoring.options = list(netshort=T)
#NetCombo
scoring.options = list(netcombo=T)
job.id = submit.job(result.table, species, tissue, network.source, scoring.options)

emreg00/guildifyR documentation built on July 19, 2019, 3:44 p.m.