retrieve.overlap: Retrieve overlap between two results using two job ids

In emreg00/guildifyR: GUILDify R

Description

Retrieve overlap between two results using two job ids

Usage

retrieve.overlap(job.id1, job.id2, top.validated = T, fetch.files = F,
  output.dir = NULL)

Arguments

job.id1	Job id 1
job.id2	Job id 2
top.validated	Flag to get overlap between either top-ranking functionally validated proteins (default) or top top-ranking 1%
fetch.files	Flag to fetch result files (for top-ranking 1%) from server and save them locally in output.dir
output.dir	Directory to save the ranking, function, subnetwork and drug info files fetched from the server

Value

result List containing scores of common top-ranking proteins, common functions enriched among top-ranking proteins, drugs targeting common top-ranking proteins (Note that the number of top-ranking proteins and common functions are limited to 500)

Examples

result = retrieve.overlap(job.id1, job.id2)
getSlots(class(result))
#Scores
head(gScores(result))
#Common functions between top ranking genes of two results
head(gFunctions(result))
#Functions of top ranking common genes of two results
head(gFunctions2(result))
#Drugs
head(gDrugs(result))

emreg00/guildifyR documentation built on July 19, 2019, 3:44 p.m.