emvolz-phylodynamics/phydynR: Model-based coalescent simulation and likelihood for phylodynamic inference
This package provides functions for defining infectious disease models or ecological process models in terms of ODEs (ordinary differential equations) or SDEs (stochastic differential equations); functions for simulating trees conditional on process models; and functions for computing likelihoods of trees conditional on a process model.
Getting started
Browse package contents
Package details |
|
|---|---|
| Maintainer | |
| License | GPL |
| Version | 0.2.5 |
| URL | http://emvolz-phylodynamics.github.io/phydynR/ https://github.com/emvolz-phylodynamics/phydynR |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
|
