emvolz-phylodynamics/phydynR: Model-based coalescent simulation and likelihood for phylodynamic inference

This package provides functions for defining infectious diseae models or ecological process models in terms of ODEs or SDEs; functions for simulating trees conditional on process models; and functions for computing likelihoods of trees conditional on a process model.

Getting started

Package details

AuthorErik Volz
MaintainerErik Volz <[email protected]>
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
emvolz-phylodynamics/phydynR documentation built on May 16, 2019, 5:11 a.m.