API for emvolz-phylodynamics/phydynR
Model-based coalescent simulation and likelihood for phylodynamic inference
| Global functions | |
|---|---|
| .cd42stage | Source code |
| .phylostructure2newick | Source code |
| .solve.Q.A.L.boost | Source code |
| .solve.Q.A.L.boost1 | Source code |
| .solve.Q.A.L.deSolve | Source code |
| .update.alpha.cpp | Source code Source code |
| DatedTree | Man page Source code |
| ace | Source code |
| build.demographic.process | Man page Source code |
| colik | Man page |
| colik.fgy1 | Source code |
| colik.modular0 | Source code |
| colik.pik | Source code |
| colik.pik.fgy | Man page Source code |
| dAL | Source code |
| dQL | Source code |
| eventTimes2extant | Source code |
| phydynR | Man page |
| phylo.source.attribution | Source code |
| phylo.source.attribution.hiv.het | Source code |
| phylo.source.attribution.hiv.msm | Source code |
| phylo.source.attribution.multiDeme.fgy | Source code |
| phylo.source.attribution.multiDeme.model | Source code |
| rco_finite_size_correction2 | Source code |
| show.demographic.process | Man page Source code |
| sim.co.tree | Man page Source code |
| sim.co.tree.fgy | Source code |
| simulateTreeCpp2 | Source code |
| simulateTreeCpp3x0 | Source code |
| solvePikL0 | Source code |
| solvePikL1 | Source code |
| solveQALboost0 | Source code |
| solveQALboost1 | Source code |
| solveQfwd0 | Source code |
| sourceAttribMultiDemeCpp | Source code |
| sourceAttribMultiDemeCpp2 | Source code |
| updateWCpp | Source code |
| update_alpha0 | Source code |
| update_states0 | Source code |
| update_states1 | Source code |
