colik.pik.fgy: Compute a structured coalescent likelihood given a dated...
In emvolz-phylodynamics/phydynR: Model-based coalescent simulation and likelihood for phylodynamic inference
colik.pik.fgy R Documentation
Compute a structured coalescent likelihood given a dated genealogy and a demographic history in FGY format
Description
Compute a structured coalescent likelihood given a dated genealogy and a demographic history in FGY format
Usage
colik.pik.fgy(
tree,
tfgy,
timeOfOriginBoundaryCondition = TRUE,
maxHeight = Inf,
forgiveAgtY = 1,
AgtY_penalty = 1,
returnTree = FALSE,
step_size_res = 10,
PL2 = FALSE
)
emvolz-phylodynamics/phydynR documentation built on July 28, 2023, 6:06 a.m.
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| colik.pik.fgy | R Documentation |
Compute a structured coalescent likelihood given a dated genealogy and a demographic history in FGY format
Description
Compute a structured coalescent likelihood given a dated genealogy and a demographic history in FGY format
Usage
colik.pik.fgy(
tree,
tfgy,
timeOfOriginBoundaryCondition = TRUE,
maxHeight = Inf,
forgiveAgtY = 1,
AgtY_penalty = 1,
returnTree = FALSE,
step_size_res = 10,
PL2 = FALSE
)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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