prep_tip_labels_seijr: Prepare an alignment of regional and exogenous sequences with...
In emvolz-phylodynamics/sarscov2Rutils: Scripts to support preparation and analysis of SARS CoV 2 analyses
View source: R/sampleSelection1.R
Description
Prepare an alignment of regional and exogenous sequences with tip labels for SEIJR in PhyDyn
Usage
1
prep_tip_labels_seijr(algnfn, outfn, regiontips, exogtips, metadata)
Arguments
algnfn
path to gisaid aligment
outfn
path to save analysis alignment
regiontips
vector of sequence id
exogtips
vector of sequence id
metadata
data frame with gisaid metadata
emvolz-phylodynamics/sarscov2Rutils documentation built on Nov. 17, 2020, 9:22 a.m.
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View source: R/sampleSelection1.R
Description
Prepare an alignment of regional and exogenous sequences with tip labels for SEIJR in PhyDyn
Usage
1 | prep_tip_labels_seijr(algnfn, outfn, regiontips, exogtips, metadata)
|
Arguments
algnfn |
path to gisaid aligment |
outfn |
path to save analysis alignment |
regiontips |
vector of sequence id |
exogtips |
vector of sequence id |
metadata |
data frame with gisaid metadata |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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