outlierTips: Detect terminal lineages with unusually large evolutionary...
In emvolz/treedater: Fast Molecular Clock Dating of Phylogenetic Trees with Rate Variation
outlierTips R Documentation
Detect terminal lineages with unusually large evolutionary divergence under the fitted treedater model
Description
This is a convient wrapper of the *outlier.lineages*
Usage
outlierTips(td, alpha = 0.05)
Arguments
td
A fitted treedater object
alpha
The tail probability used for classifying lineages as outliers
Value
A data frame summarizing for each lineage the p values, adjusted p values ('q'), likelihood, rates, and branch lengths.
See Also
dater
outlier.lineages
emvolz/treedater documentation built on March 25, 2022, 11:13 a.m.
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| outlierTips | R Documentation |
Detect terminal lineages with unusually large evolutionary divergence under the fitted treedater model
Description
This is a convient wrapper of the *outlier.lineages*
Usage
outlierTips(td, alpha = 0.05)
Arguments
td |
A fitted treedater object |
alpha |
The tail probability used for classifying lineages as outliers |
Value
A data frame summarizing for each lineage the p values, adjusted p values ('q'), likelihood, rates, and branch lengths.
See Also
dater outlier.lineages
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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