sampleYearsFromLabels | R Documentation |
Compute a vector of numeric sample times from labels in a sequence aligment or phylogeny
sampleYearsFromLabels( tips, dateFormat = "%Y-%m-%d", delimiter = NULL, index = NULL, regex = NULL )
tips |
A character vector supplying the name of each sample |
dateFormat |
The format of the sample date. See ?Date for more information |
delimiter |
Character(s) which separate data in each label |
index |
Integer position of the date string in each label with respect to *delimiter* |
regex |
A regular expression for finding the date substring. Should not be used with *delimiter* or *index* |
Numeric vector with sample time in decimal format.
## A couple of labels for Ebola virus sequences: sampleYearsFromLabels( c('EBOV|AA000000|EM104|SierraLeone_EM|2014-06-02' , 'EBOV|AA000000|G3713|SierraLeone_G|2014-06-09') , delimiter='|' ) ## Equivalently: sampleYearsFromLabels( c('EBOV|AA000000|EM104|SierraLeone_EM|2014-06-02' , 'EBOV|AA000000|G3713|SierraLeone_G|2014-06-09') , regex='[0-9]+-[0-9]+-[0-9]+')
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