inst/scripts/render_output.R

In epiforecasts/WuhanSeedingVsTransmission: The transmissibility of novel Coronavirus in the early stages of the 2019-20 outbreak in Wuhan

message("Moving into the vignettes directory")
setwd("vignettes")

message("Rendering output to all formats")
## Render to analysis to required output formats
rmarkdown::render("output.Rmd", 
                  output_dir = "rendered_output", 
                  knit_root_dir = c("."),
                  output_format = c("html_document"))

rmarkdown::render("output.Rmd", 
                  output_dir = "rendered_output", 
                  knit_root_dir = c("."),
                  output_format = c("pdf_document"))

rmarkdown::render("output.Rmd", 
                  output_dir = "rendered_output", 
                  knit_root_dir = c("."),
                  output_format = c("word_document"))

rmarkdown::render("output.Rmd", 
                  output_dir = ".", 
                  knit_root_dir = c("."),
                  output_format = c("md_document"))

message("Moving back into top level directory")
setwd("..")

message("Building all website docs")
## Make package website docs
pkgdown::build_site()