Files in ergonyc/omicser
NDCN Omics Browser
.Rbuildignore
.dockerignore
.github/.gitignore
.github/ISSUE_TEMPLATE/bug_report.md
.github/ISSUE_TEMPLATE/custom.md
.github/ISSUE_TEMPLATE/feature_request.md
.github/workflows/pkgdown.yaml
.gitignore
CODE_OF_CONDUCT.md
CONTRIBUTING.md
DESCRIPTION
Dockerfile
GOVERNENCE_draft.md
LICENSE
LICENSE.md
NAMESPACE
NEWS.md
R/app_config.R
R/app_server.R
R/app_ui.R
R/fct_ingestor.R
R/fct_pg_diff_expr.R
R/fct_pg_expression.R
R/golem_utils_server.R
R/golem_utils_ui.R
R/mod_additional_info.R
R/mod_help.R
R/mod_ingestor.R
R/mod_omic_selector.R
R/mod_pg_diff_expr.R
R/mod_pg_expression.R
R/mod_pg_table.R
R/mod_pg_vis_qc.R
R/mod_playground.R
R/mod_side_info.R
R/mod_side_selector.R
R/mod_subset_selector.R
R/mod_table.R
R/mod_tables_tab.R
R/mod_welcome.R
R/pre_process_helpers.R
R/run_app.R
R/setup_helpers.R
R/utils-data-table.R
R/utils-pipe.R
README.Rmd
README.md
_pkgdown.yml
dev/01_start.R
dev/02_dev.R
dev/03_deploy.R
dev/run_dev.R
dev/run_dev2.R
docker_stuff/.Renviron
docker_stuff/app_config.yml
docker_stuff/install_py_env.R
examples/README.md
examples/answerALS_proteomics_curate_and_config.R
examples/answerALS_transcriptomics_curate_and_config.R
examples/app_config.yml
examples/assert_python_script.R
examples/config_script.R
examples/databases/.placeholder
examples/dev_run_browser_script.R
examples/download_examples_script.R
examples/install_script.R
examples/pbmc3k_curate_and_config.R
examples/proteomics_curate_and_config.R
examples/raw_data/.placeholder
examples/run_browser_script.R
inst/WORDLIST
inst/anndata_for_r.png
inst/app/app_config.yml
inst/app/www/additional_info.Rmd
inst/app/www/favicon.ico
inst/app/www/info.Rmd
inst/app/www/logo.svg
inst/app/www/welcome.Rmd
inst/clone_gh_inrstuido.png
inst/golem-config.yml
man/compute_de_table.Rd
man/display_document.Rd
man/figures/README-omicser-overview.drawio
man/figures/README-omicser-overview.png
man/get_config.Rd
man/get_db_conf.Rd
man/get_db_meta.Rd
man/includeRMarkdown.Rd
man/pack_anndata_from_csv.Rd
man/pack_anndata_from_seurat.Rd
man/pipe.Rd
man/run_app.Rd
man/run_defaults.Rd
man/run_docker.Rd
man/run_in_browser.Rd
man/setup_database.Rd
man/volcano_plot.Rd
man/word_to_markdown.Rd
man/write_config.Rd
man/write_db_conf.Rd
man/write_db_meta.Rd
omicser.Rproj
tests/spelling.R
tests/testthat.R
tests/testthat/test-app.R
tests/testthat/test-golem-recommended.R
vignettes/00_quickstart.Rmd
vignettes/01_installation.Rmd
vignettes/02_data_curation.Rmd
vignettes/03_configuration.Rmd
vignettes/04_launching.Rmd
vignettes/browsing.Rmd
vignettes/docker.Rmd
vignettes/multiple_databases.Rmd
vignettes/sharing.Rmd
