clusterR-methods: Kmeans subclustering within each clusters of peaks

In ericaenjoy3/TdAvg: Tornado and Average Plots of Coverage Signals Centered on Peaks

Description

Find the optimum number of subclusters within each clusters, Kmeans sub-clustering within each clusters, Update the cluster labels (the 4th column) of the bed slot of a chip object, by labels of the combinations of cluster and subcluster labels.

Usage

clusterR(chip.obj, info.obj, matlist.obj, nms)

## S4 method for signature 'chip,info,matlist'
clusterR(chip.obj, info.obj, matlist.obj, nms)

Arguments

chip.obj	A chip object.
info.obj	An info object.
matlist.obj	A matlist object.
nms	A character vector of length one, specifying the directory and the prefix for plotting the optimum number of subclusters within each cluster.

Value

An updated chip object.

ericaenjoy3/TdAvg documentation built on May 8, 2019, 3:45 p.m.