info-class: An S4 class to represent information of peaks to keep, to...

In ericaenjoy3/TdAvg: Tornado and Average Plots of Coverage Signals Centered on Peaks

Description

Store order for plotting and filtering (integer ord.idx), to use for return index, filter order of peaks (ord.idx) by whether to keep (kpt.idx) width of up/down-stream window (integer w), step size within the window (integer s), coordinates of data collected with reference to window center (numeric points).

Slots

ord.idx

integer object represeting order of (subset of)ChIP-seq peaks to plot in the Tornado plot.

w

integer object representing number of basepairs flanking the middle of intervals for plotting.

s

integer object representing every n'th basepairs to sample data values.

points

numeric object representing coordinates in basepairs with reference to the mid-point of interval for data collected.

ericaenjoy3/TdAvg documentation built on May 8, 2019, 3:45 p.m.