tcpl_to_model_dat: Cast tcpl output to model format

In ericwatt/eapath: Computational Models for Estrogen and Androgen Receptor Activity

Description

tcpl_to_model_dat preps tcpl output for model input.

Usage

tcpl_to_model_dat(dat, pathway)

Arguments

dat	output from tcpl level 5 data
pathway	string, specify ER or AR

Details

# This function is to take a pipeline formatted data.table (long format, one m4id per row) and convert to the form needed by the ER model (one chemical per row, multiple columns for assays) Requires a tcplPrepOtpt(tcplLoadData()) formatted data.table also requires an assay_order (list of assay) so that NAs can be converted assumed already subset (one unique row per code)

Value

dat_cast a data.table cast into the correct format for the model

ericwatt/eapath documentation built on May 16, 2019, 8:41 a.m.