dev/run_dev.R
In erifa1/ExploreMetabar: ExploreMetabar
# Set options here
options(golem.app.prod = FALSE) # TRUE = production mode, FALSE = development mode
# Detach all loaded packages and clean your environment
golem::detach_all_attached()
# rm(list=ls(all.names = TRUE))
# Document and reload your package
golem::document_and_reload()
# Run the application
devtools::load_all(".")
ExploreMetabar::run_app()
# one line test
options(golem.app.prod = FALSE);golem::detach_all_attached();golem::document_and_reload();devtools::load_all(".");ExploreMetabar::run_app()
# # Deploy
# options(repos = BiocManager::repositories()); getOption("repos")
# rsconnect::deployApp("~/Repository/LRF/shiny_app/ExploreMetabar/")
# rsconnect::appDependencies("~/Repository/LRF/shiny_app/ExploreMetabar/")
# package version source
# 1 AlgDesign 1.2.0 CRAN
# 2 AnnotationDbi 1.48.0 Bioconductor
# 3 BH 1.72.0-3 CRAN
# 4 Biobase 2.46.0 Bioconductor
# 5 BiocGenerics 0.32.0 Bioconductor
# 6 BiocParallel 1.20.1 Bioconductor
# 7 Biostrings 2.54.0 Bioconductor
# 8 DBI 1.1.0 CRAN
# 9 DESeq2 1.27.31 github
# 10 DT 0.13 CRAN
# 11 DelayedArray 0.12.2 Bioconductor
# 12 GA 3.2 CRAN
# 13 GenomeInfoDb 1.22.1 Bioconductor
# 14 GenomeInfoDbData 1.2.2 Bioconductor
# 15 GenomicRanges 1.38.0 Bioconductor
# 16 IHW 1.14.0 Bioconductor
# 17 IRanges 2.20.2 Bioconductor
# 18 KernSmooth 2.23-17 CRAN
# 19 MASS 7.3-51.6 CRAN
# 20 Matrix 1.2-18 CRAN
# 21 PLNmodels 0.10.5-9000 github
# 22 R6 2.4.1 CRAN
# 23 RColorBrewer 1.1-2 CRAN
# 24 RCurl 1.98-1.1 CRAN
# 25 RSQLite 2.2.0 CRAN
# 26 Rcpp 1.0.4.6 CRAN
# 27 RcppArmadillo 0.9.860.2.0 CRAN
# 28 Rhdf5lib 1.8.0 Bioconductor
# 29 Rtsne 0.15 CRAN
# 30 S4Vectors 0.24.3 Bioconductor
# 31 SummarizedExperiment 1.16.1 Bioconductor
# 32 VennDiagram 1.6.20 CRAN
# 33 WikidataR 1.4.0 CRAN
# 34 WikipediR 1.5.0 CRAN
# 35 Wrench 1.4.0 Bioconductor
# 36 XML 3.99-0.3 CRAN
# 37 XVector 0.26.0 Bioconductor
# 38 ade4 1.7-15 CRAN
# 39 agricolae 1.3-2 CRAN
# 40 annotate 1.64.0 Bioconductor
# 41 ape 5.3 CRAN
# 42 askpass 1.1 CRAN
# 43 assertthat 0.2.1 CRAN
# 44 attempt 0.3.0 CRAN
# 45 backports 1.1.6 CRAN
# 46 base64enc 0.1-3 CRAN
# 47 biomformat 1.14.0 Bioconductor
# 48 bit 1.1-15.2 CRAN
# 49 bit64 0.9-7 CRAN
# 50 bitops 1.0-6 CRAN
# 51 blob 1.2.1 CRAN
# 52 bold 0.9.0 CRAN
# 53 brew 1.0-6 CRAN
# 54 broom 0.5.5 CRAN
# 55 caTools 1.18.0 CRAN
# 56 callr 3.4.3 CRAN
# 57 class 7.3-17 CRAN
# 58 classInt 0.4-3 CRAN
# 59 cli 2.0.2 CRAN
# 60 clipr 0.7.0 CRAN
# 61 cluster 2.1.0 CRAN
# 62 codetools 0.2-16 CRAN
# 63 colorspace 1.4-1 CRAN
# 64 combinat 0.0-8 CRAN
# 65 commonmark 1.7 CRAN
# 66 config 0.3 CRAN
# 67 corrplot 0.84 CRAN
# 68 cowplot 1.0.0 CRAN
# 69 crayon 1.3.4 CRAN
# 70 crosstalk 1.1.0.1 CRAN
# 71 crul 0.9.0 CRAN
# 72 curl 4.3 CRAN
# 73 data.table 1.12.8 CRAN
# 74 desc 1.2.0 CRAN
# 75 digest 0.6.25 CRAN
# 76 dockerfiler 0.1.3 CRAN
# 77 dplyr 0.8.5 CRAN
# 78 e1071 1.7-3 CRAN
# 79 ellipsis 0.3.0 CRAN
# 80 evaluate 0.14 CRAN
# 81 fansi 0.4.1 CRAN
# 82 farver 2.0.3 CRAN
# 83 fastmap 1.0.1 CRAN
# 84 fastmatch 1.1-0 CRAN
# 85 fdrtool 1.2.15 CRAN
# 86 forcats 0.5.0 CRAN
# 87 foreach 1.5.0 CRAN
# 88 formatR 1.7 CRAN
# 89 fs 1.4.1 CRAN
# 90 futile.logger 1.4.3 CRAN
# 91 futile.options 1.0.1 CRAN
# 92 gdata 2.18.0 CRAN
# 93 gdtools 0.2.2 CRAN
# 94 genefilter 1.68.0 Bioconductor
# 95 geneplotter 1.64.0 Bioconductor
# 96 generics 0.0.2 CRAN
# 97 ggfittext 0.8.1 CRAN
# 98 ggplot2 3.3.0 CRAN
# 99 ggrepel 0.8.2 CRAN
# 100 gh 1.1.0 CRAN
# 101 git2r 0.26.1 CRAN
# 102 glassoFast 1.0 CRAN
# 103 glmnet 3.0-2 CRAN
# 104 glue 1.4.0.9000 github
# 105 golem 0.2.1 CRAN
# 106 gplots 3.0.3 CRAN
# 107 gridExtra 2.3 CRAN
# 108 gtable 0.3.0 CRAN
# 109 gtools 3.8.2 CRAN
# 110 haven 2.2.0 CRAN
# 111 here 0.1 CRAN
# 112 hexbin 1.28.1 CRAN
# 113 highr 0.8 CRAN
# 114 hms 0.5.3 CRAN
# 115 hoardr 0.5.2 CRAN
# 116 htmltools 0.4.0 CRAN
# 117 htmlwidgets 1.5.1 CRAN
# 118 httpcode 0.3.0 CRAN
# 119 httpuv 1.5.2 CRAN
# 120 httr 1.4.1 CRAN
# 121 igraph 1.2.5 CRAN
# 122 ini 0.3.1 CRAN
# 123 isoband 0.2.1 CRAN
# 124 iterators 1.0.12 CRAN
# 125 jsonlite 1.6.1 CRAN
# 126 klaR 0.6-15 CRAN
# 127 knitr 1.28 CRAN
# 128 labeling 0.3 CRAN
# 129 labelled 2.2.2 CRAN
# 130 lambda.r 1.2.4 CRAN
# 131 later 1.0.0 CRAN
# 132 lattice 0.20-41 CRAN
# 133 lazyeval 0.2.2 CRAN
# 134 lifecycle 0.2.0 CRAN
# 135 limma 3.42.2 Bioconductor
# 136 locfit 1.5-9.4 CRAN
# 137 lpsymphony 1.14.0 Bioconductor
# 138 magrittr 1.5 CRAN
# 139 markdown 1.1 CRAN
# 140 matrixStats 0.56.0 CRAN
# 141 memoise 1.1.0 CRAN
# 142 metacoder 0.3.3.9002 github
# 143 metagenomeSeq 1.28.2 Bioconductor
# 144 mgcv 1.8-31 CRAN
# 145 microbiome 1.8.0 Bioconductor
# 146 mime 0.9 CRAN
# 147 miniUI 0.1.1.1 CRAN
# 148 multtest 2.42.0 Bioconductor
# 149 munsell 0.5.0 CRAN
# 150 natserv 0.3.0 CRAN
# 151 nlme 3.1-147 CRAN
# 152 nloptr 1.2.2.1 CRAN
# 153 openssl 1.4.1 CRAN
# 154 permute 0.9-5 CRAN
# 155 phangorn 2.5.5 CRAN
# 156 phyloseq 1.30.0 Bioconductor
# 157 phylotate 1.3 CRAN
# 158 pillar 1.4.3 CRAN
# 159 pixmap 0.4-11 CRAN
# 160 pkgbuild 1.0.6 CRAN
# 161 pkgconfig 2.0.3 CRAN
# 162 pkgload 1.0.2 CRAN
# 163 plogr 0.2.0 CRAN
# 164 plotly 4.9.2.1 CRAN
# 165 plyr 1.8.6 CRAN
# 166 praise 1.0.0 CRAN
# 167 prettyunits 1.1.1 CRAN
# 168 processx 3.4.2 CRAN
# 169 progress 1.2.2 CRAN
# 170 promises 1.1.0 CRAN
# 171 ps 1.3.2 CRAN
# 172 purrr 0.3.3 CRAN
# 173 quadprog 1.5-8 CRAN
# 174 questionr 0.7.0 CRAN
# 175 rappdirs 0.3.1 CRAN
# 176 readr 1.3.1 CRAN
# 177 rematch2 2.1.1 CRAN
# 178 remotes 2.1.1 CRAN
# 179 rentrez 1.2.2 CRAN
# 180 reshape 0.8.8 CRAN
# 181 reshape2 1.4.4 CRAN
# 182 rhdf5 2.30.1 Bioconductor
# 183 ritis 0.8.0 CRAN
# 184 rlang 0.4.5 CRAN
# 185 rmarkdown 2.1 CRAN
# 186 rncl 0.8.4 CRAN
# 187 rotl 3.0.10 CRAN
# 188 roxygen2 7.1.0 CRAN
# 189 rprojroot 1.3-2 CRAN
# 190 rredlist 0.6.0 CRAN
# 191 rstudioapi 0.11 CRAN
# 192 rvest 0.3.5 CRAN
# 193 scales 1.1.0 CRAN
# 194 segmented 1.1-0 CRAN
# 195 selectr 0.4-2 CRAN
# 196 seqinr 3.6-1 CRAN
# 197 shades 1.4.0 CRAN
# 198 shape 1.4.4 CRAN
# 199 shiny 1.4.0.2 CRAN
# 200 shinydashboard 0.7.1 CRAN
# 201 slam 0.1-47 CRAN
# 202 snow 0.4-3 CRAN
# 203 solrium 1.1.4 CRAN
# 204 sourcetools 0.1.7 CRAN
# 205 sp 1.4-1 CRAN
# 206 stringi 1.4.6 CRAN
# 207 stringr 1.4.0 CRAN
# 208 survival 3.1-12 CRAN
# 209 svglite 1.2.3 CRAN
# 210 sys 3.3 CRAN
# 211 systemfonts 0.2.0 CRAN
# 212 taxa 0.3.3 CRAN
# 213 taxize 0.9.94 CRAN
# 214 testthat 2.3.2 CRAN
# 215 tibble 3.0.0 CRAN
# 216 tidyr 1.0.2 CRAN
# 217 tidyselect 1.0.0 CRAN
# 218 tinytex 0.21 CRAN
# 219 traits 0.4.2 CRAN
# 220 triebeard 0.3.0 CRAN
# 221 urltools 1.7.3 CRAN
# 222 usethis 1.6.0 CRAN
# 223 utf8 1.1.4 CRAN
# 224 vctrs 0.3.1 CRAN
# 225 vegan 2.5-6 CRAN
# 226 viridisLite 0.3.0 CRAN
# 227 whisker 0.4 CRAN
# 228 wikitaxa 0.3.0 CRAN
# 229 withr 2.2.0 CRAN
# 230 worrms 0.4.0 CRAN
# 231 xfun 0.13 CRAN
# 232 xml2 1.3.1 CRAN
# 233 xtable 1.8-4 CRAN
# 234 yaml 2.2.1 CRAN
# 235 zlibbioc 1.32.0 Bioconductor
# 236 zoo 1.8-7 CRAN
erifa1/ExploreMetabar documentation built on Jan. 12, 2023, 1:51 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
# Set options here
options(golem.app.prod = FALSE) # TRUE = production mode, FALSE = development mode
# Detach all loaded packages and clean your environment
golem::detach_all_attached()
# rm(list=ls(all.names = TRUE))
# Document and reload your package
golem::document_and_reload()
# Run the application
devtools::load_all(".")
ExploreMetabar::run_app()
# one line test
options(golem.app.prod = FALSE);golem::detach_all_attached();golem::document_and_reload();devtools::load_all(".");ExploreMetabar::run_app()
# # Deploy
# options(repos = BiocManager::repositories()); getOption("repos")
# rsconnect::deployApp("~/Repository/LRF/shiny_app/ExploreMetabar/")
# rsconnect::appDependencies("~/Repository/LRF/shiny_app/ExploreMetabar/")
# package version source
# 1 AlgDesign 1.2.0 CRAN
# 2 AnnotationDbi 1.48.0 Bioconductor
# 3 BH 1.72.0-3 CRAN
# 4 Biobase 2.46.0 Bioconductor
# 5 BiocGenerics 0.32.0 Bioconductor
# 6 BiocParallel 1.20.1 Bioconductor
# 7 Biostrings 2.54.0 Bioconductor
# 8 DBI 1.1.0 CRAN
# 9 DESeq2 1.27.31 github
# 10 DT 0.13 CRAN
# 11 DelayedArray 0.12.2 Bioconductor
# 12 GA 3.2 CRAN
# 13 GenomeInfoDb 1.22.1 Bioconductor
# 14 GenomeInfoDbData 1.2.2 Bioconductor
# 15 GenomicRanges 1.38.0 Bioconductor
# 16 IHW 1.14.0 Bioconductor
# 17 IRanges 2.20.2 Bioconductor
# 18 KernSmooth 2.23-17 CRAN
# 19 MASS 7.3-51.6 CRAN
# 20 Matrix 1.2-18 CRAN
# 21 PLNmodels 0.10.5-9000 github
# 22 R6 2.4.1 CRAN
# 23 RColorBrewer 1.1-2 CRAN
# 24 RCurl 1.98-1.1 CRAN
# 25 RSQLite 2.2.0 CRAN
# 26 Rcpp 1.0.4.6 CRAN
# 27 RcppArmadillo 0.9.860.2.0 CRAN
# 28 Rhdf5lib 1.8.0 Bioconductor
# 29 Rtsne 0.15 CRAN
# 30 S4Vectors 0.24.3 Bioconductor
# 31 SummarizedExperiment 1.16.1 Bioconductor
# 32 VennDiagram 1.6.20 CRAN
# 33 WikidataR 1.4.0 CRAN
# 34 WikipediR 1.5.0 CRAN
# 35 Wrench 1.4.0 Bioconductor
# 36 XML 3.99-0.3 CRAN
# 37 XVector 0.26.0 Bioconductor
# 38 ade4 1.7-15 CRAN
# 39 agricolae 1.3-2 CRAN
# 40 annotate 1.64.0 Bioconductor
# 41 ape 5.3 CRAN
# 42 askpass 1.1 CRAN
# 43 assertthat 0.2.1 CRAN
# 44 attempt 0.3.0 CRAN
# 45 backports 1.1.6 CRAN
# 46 base64enc 0.1-3 CRAN
# 47 biomformat 1.14.0 Bioconductor
# 48 bit 1.1-15.2 CRAN
# 49 bit64 0.9-7 CRAN
# 50 bitops 1.0-6 CRAN
# 51 blob 1.2.1 CRAN
# 52 bold 0.9.0 CRAN
# 53 brew 1.0-6 CRAN
# 54 broom 0.5.5 CRAN
# 55 caTools 1.18.0 CRAN
# 56 callr 3.4.3 CRAN
# 57 class 7.3-17 CRAN
# 58 classInt 0.4-3 CRAN
# 59 cli 2.0.2 CRAN
# 60 clipr 0.7.0 CRAN
# 61 cluster 2.1.0 CRAN
# 62 codetools 0.2-16 CRAN
# 63 colorspace 1.4-1 CRAN
# 64 combinat 0.0-8 CRAN
# 65 commonmark 1.7 CRAN
# 66 config 0.3 CRAN
# 67 corrplot 0.84 CRAN
# 68 cowplot 1.0.0 CRAN
# 69 crayon 1.3.4 CRAN
# 70 crosstalk 1.1.0.1 CRAN
# 71 crul 0.9.0 CRAN
# 72 curl 4.3 CRAN
# 73 data.table 1.12.8 CRAN
# 74 desc 1.2.0 CRAN
# 75 digest 0.6.25 CRAN
# 76 dockerfiler 0.1.3 CRAN
# 77 dplyr 0.8.5 CRAN
# 78 e1071 1.7-3 CRAN
# 79 ellipsis 0.3.0 CRAN
# 80 evaluate 0.14 CRAN
# 81 fansi 0.4.1 CRAN
# 82 farver 2.0.3 CRAN
# 83 fastmap 1.0.1 CRAN
# 84 fastmatch 1.1-0 CRAN
# 85 fdrtool 1.2.15 CRAN
# 86 forcats 0.5.0 CRAN
# 87 foreach 1.5.0 CRAN
# 88 formatR 1.7 CRAN
# 89 fs 1.4.1 CRAN
# 90 futile.logger 1.4.3 CRAN
# 91 futile.options 1.0.1 CRAN
# 92 gdata 2.18.0 CRAN
# 93 gdtools 0.2.2 CRAN
# 94 genefilter 1.68.0 Bioconductor
# 95 geneplotter 1.64.0 Bioconductor
# 96 generics 0.0.2 CRAN
# 97 ggfittext 0.8.1 CRAN
# 98 ggplot2 3.3.0 CRAN
# 99 ggrepel 0.8.2 CRAN
# 100 gh 1.1.0 CRAN
# 101 git2r 0.26.1 CRAN
# 102 glassoFast 1.0 CRAN
# 103 glmnet 3.0-2 CRAN
# 104 glue 1.4.0.9000 github
# 105 golem 0.2.1 CRAN
# 106 gplots 3.0.3 CRAN
# 107 gridExtra 2.3 CRAN
# 108 gtable 0.3.0 CRAN
# 109 gtools 3.8.2 CRAN
# 110 haven 2.2.0 CRAN
# 111 here 0.1 CRAN
# 112 hexbin 1.28.1 CRAN
# 113 highr 0.8 CRAN
# 114 hms 0.5.3 CRAN
# 115 hoardr 0.5.2 CRAN
# 116 htmltools 0.4.0 CRAN
# 117 htmlwidgets 1.5.1 CRAN
# 118 httpcode 0.3.0 CRAN
# 119 httpuv 1.5.2 CRAN
# 120 httr 1.4.1 CRAN
# 121 igraph 1.2.5 CRAN
# 122 ini 0.3.1 CRAN
# 123 isoband 0.2.1 CRAN
# 124 iterators 1.0.12 CRAN
# 125 jsonlite 1.6.1 CRAN
# 126 klaR 0.6-15 CRAN
# 127 knitr 1.28 CRAN
# 128 labeling 0.3 CRAN
# 129 labelled 2.2.2 CRAN
# 130 lambda.r 1.2.4 CRAN
# 131 later 1.0.0 CRAN
# 132 lattice 0.20-41 CRAN
# 133 lazyeval 0.2.2 CRAN
# 134 lifecycle 0.2.0 CRAN
# 135 limma 3.42.2 Bioconductor
# 136 locfit 1.5-9.4 CRAN
# 137 lpsymphony 1.14.0 Bioconductor
# 138 magrittr 1.5 CRAN
# 139 markdown 1.1 CRAN
# 140 matrixStats 0.56.0 CRAN
# 141 memoise 1.1.0 CRAN
# 142 metacoder 0.3.3.9002 github
# 143 metagenomeSeq 1.28.2 Bioconductor
# 144 mgcv 1.8-31 CRAN
# 145 microbiome 1.8.0 Bioconductor
# 146 mime 0.9 CRAN
# 147 miniUI 0.1.1.1 CRAN
# 148 multtest 2.42.0 Bioconductor
# 149 munsell 0.5.0 CRAN
# 150 natserv 0.3.0 CRAN
# 151 nlme 3.1-147 CRAN
# 152 nloptr 1.2.2.1 CRAN
# 153 openssl 1.4.1 CRAN
# 154 permute 0.9-5 CRAN
# 155 phangorn 2.5.5 CRAN
# 156 phyloseq 1.30.0 Bioconductor
# 157 phylotate 1.3 CRAN
# 158 pillar 1.4.3 CRAN
# 159 pixmap 0.4-11 CRAN
# 160 pkgbuild 1.0.6 CRAN
# 161 pkgconfig 2.0.3 CRAN
# 162 pkgload 1.0.2 CRAN
# 163 plogr 0.2.0 CRAN
# 164 plotly 4.9.2.1 CRAN
# 165 plyr 1.8.6 CRAN
# 166 praise 1.0.0 CRAN
# 167 prettyunits 1.1.1 CRAN
# 168 processx 3.4.2 CRAN
# 169 progress 1.2.2 CRAN
# 170 promises 1.1.0 CRAN
# 171 ps 1.3.2 CRAN
# 172 purrr 0.3.3 CRAN
# 173 quadprog 1.5-8 CRAN
# 174 questionr 0.7.0 CRAN
# 175 rappdirs 0.3.1 CRAN
# 176 readr 1.3.1 CRAN
# 177 rematch2 2.1.1 CRAN
# 178 remotes 2.1.1 CRAN
# 179 rentrez 1.2.2 CRAN
# 180 reshape 0.8.8 CRAN
# 181 reshape2 1.4.4 CRAN
# 182 rhdf5 2.30.1 Bioconductor
# 183 ritis 0.8.0 CRAN
# 184 rlang 0.4.5 CRAN
# 185 rmarkdown 2.1 CRAN
# 186 rncl 0.8.4 CRAN
# 187 rotl 3.0.10 CRAN
# 188 roxygen2 7.1.0 CRAN
# 189 rprojroot 1.3-2 CRAN
# 190 rredlist 0.6.0 CRAN
# 191 rstudioapi 0.11 CRAN
# 192 rvest 0.3.5 CRAN
# 193 scales 1.1.0 CRAN
# 194 segmented 1.1-0 CRAN
# 195 selectr 0.4-2 CRAN
# 196 seqinr 3.6-1 CRAN
# 197 shades 1.4.0 CRAN
# 198 shape 1.4.4 CRAN
# 199 shiny 1.4.0.2 CRAN
# 200 shinydashboard 0.7.1 CRAN
# 201 slam 0.1-47 CRAN
# 202 snow 0.4-3 CRAN
# 203 solrium 1.1.4 CRAN
# 204 sourcetools 0.1.7 CRAN
# 205 sp 1.4-1 CRAN
# 206 stringi 1.4.6 CRAN
# 207 stringr 1.4.0 CRAN
# 208 survival 3.1-12 CRAN
# 209 svglite 1.2.3 CRAN
# 210 sys 3.3 CRAN
# 211 systemfonts 0.2.0 CRAN
# 212 taxa 0.3.3 CRAN
# 213 taxize 0.9.94 CRAN
# 214 testthat 2.3.2 CRAN
# 215 tibble 3.0.0 CRAN
# 216 tidyr 1.0.2 CRAN
# 217 tidyselect 1.0.0 CRAN
# 218 tinytex 0.21 CRAN
# 219 traits 0.4.2 CRAN
# 220 triebeard 0.3.0 CRAN
# 221 urltools 1.7.3 CRAN
# 222 usethis 1.6.0 CRAN
# 223 utf8 1.1.4 CRAN
# 224 vctrs 0.3.1 CRAN
# 225 vegan 2.5-6 CRAN
# 226 viridisLite 0.3.0 CRAN
# 227 whisker 0.4 CRAN
# 228 wikitaxa 0.3.0 CRAN
# 229 withr 2.2.0 CRAN
# 230 worrms 0.4.0 CRAN
# 231 xfun 0.13 CRAN
# 232 xml2 1.3.1 CRAN
# 233 xtable 1.8-4 CRAN
# 234 yaml 2.2.1 CRAN
# 235 zlibbioc 1.32.0 Bioconductor
# 236 zoo 1.8-7 CRAN
R Package Documentation
Browse R Packages
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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