Files in erikerhardt/isogasex

Isotopic gas exchange using TDL and Licor input. Updated version of package tdllicor

NEWS.md R/align_TDL_Licor_times.R R/assign_param_variables.R R/calc_mean_Licor.R R/calc_mean_TDL.R R/calc_mean_TDL_interp_tanks_ref.R R/extract_cycle_timing.R R/f_bs_iter_TDL_Licor.R R/f_bs_save_TDL_Licor.R R/f_init_bs_matrix.R R/f_np_bs_mean.R R/f_par_bs_mean.R R/f_plot_CI_individuals.R R/f_plot_CI_individuals_driver.R R/f_val_bs_CI.R R/f_val_bs_CI_endpoints.R R/f_val_bs_matrix.R R/f_val_bs_matrix_check.R R/f_val_calc_Cs.R R/f_val_calc_Delta_from_A_ratio.R R/f_val_calc_Delta_from_ratios_in_out.R R/f_val_calc_Delta_i_complex_for_gm.R R/f_val_calc_Delta_i_simple_for_gm.R R/f_val_calc_Delta_i_simple_for_modeling.R R/f_val_calc_Delta_obs.R R/f_val_calc_Delta_obs_permil.R R/f_val_calc_TDL_A_photosynthesis.R R/f_val_calc_all_driver.R R/f_val_calc_corrected.R R/f_val_calc_delta_13C_Assim.R R/f_val_calc_delta_13C_Resp.R R/f_val_calc_delta_permil.R R/f_val_calc_delta_proportion.R R/f_val_calc_flow_adjusted.R R/f_val_calc_gain.R R/f_val_calc_gm_point_complex.R R/f_val_calc_gm_point_simple.R R/f_val_calc_gtc.R R/f_val_calc_isotope_ratio.R R/f_val_calc_offset.R R/f_val_calc_p.R R/f_val_calc_pc_using_complex_Delta_full_model.R R/f_val_calc_pc_using_complex_Delta_no_decarboxylation.R R/f_val_calc_pc_using_gm.R R/f_val_calc_pc_using_simple_Delta_for_gm.R R/f_val_calc_pc_using_simple_Delta_for_modeling.R R/f_val_calc_pp.R R/f_val_calc_total_mol_fraction_CO2.R R/f_val_calc_xi.R R/fix_missing_TDL_values.R R/get_Licor.R R/interp_TDL_tanks_ref.R R/isogasex.R R/isogasex_logo.R R/last_TDL_index_for_means.R R/move_plot_files.R R/my_reg_fit.R R/my_reg_pred.R R/plot_A_photosynthesis.R R/plot_Ca_Cs.R R/plot_Cc_total.R R/plot_Ci_pi.R R/plot_Delta_i.R R/plot_Licor_flow_press.R R/plot_Licor_temp_light.R R/plot_corrected_total_diff_xi.R R/plot_data_cycles.R R/plot_delta_Delta_p.R R/plot_gain_offset.R R/plot_gbc_gsc_gtc.R R/plot_gm.R R/plot_not_na.R R/plot_pa_ps.R R/plot_pc_simple_complex.R R/plot_pc_total.R R/plot_pi_pa.R R/plot_val_calc_sum.R R/progress_time.R R/read_TDL.R R/read_template_param.R R/read_template_param_table_to_raw.R R/s_plot_settings_begin_end.R R/set_TDL_cycle.R R/time_window_TDL_Licor_interp.R R/val_TDL_Licor_variables.R R/write_CI_Calc_file.R R/write_CI_Licor_file.R R/write_CI_TDL_file.R R/write_all_Calc_file.R R/write_out.R R/write_progress.R R/write_summary_Calc_file.R R/write_summary_Licor_file.R R/write_summary_TDL_file.R R/x_wo_y.R README.md man/align_TDL_Licor_times.Rd man/assign_param_variables.Rd man/calc_mean_Licor.Rd man/calc_mean_TDL.Rd man/calc_mean_TDL_interp_tanks_ref.Rd man/extract_cycle_timing.Rd man/f_bs_iter_TDL_Licor.Rd man/f_bs_save_TDL_Licor.Rd man/f_init_bs_matrix.Rd man/f_np_bs_mean.Rd man/f_par_bs_mean.Rd man/f_plot_CI_individuals.Rd man/f_plot_CI_individuals_driver.Rd man/f_val_bs_CI.Rd man/f_val_bs_CI_endpoints.Rd man/f_val_bs_matrix.Rd man/f_val_bs_matrix_check.Rd man/f_val_calc_Cs.Rd man/f_val_calc_Delta_from_A_ratio.Rd man/f_val_calc_Delta_from_ratios_in_out.Rd man/f_val_calc_Delta_i_complex_for_gm.Rd man/f_val_calc_Delta_i_simple_for_gm.Rd man/f_val_calc_Delta_i_simple_for_modeling.Rd man/f_val_calc_Delta_obs.Rd man/f_val_calc_Delta_obs_permil.Rd man/f_val_calc_TDL_A_photosynthesis.Rd man/f_val_calc_all_driver.Rd man/f_val_calc_corrected.Rd man/f_val_calc_delta_13C_Assim.Rd man/f_val_calc_delta_13C_Resp.Rd man/f_val_calc_delta_permil.Rd man/f_val_calc_delta_proportion.Rd man/f_val_calc_flow_adjusted.Rd man/f_val_calc_gain.Rd man/f_val_calc_gm_point_complex.Rd man/f_val_calc_gm_point_simple.Rd man/f_val_calc_gtc.Rd man/f_val_calc_isotope_ratio.Rd man/f_val_calc_offset.Rd man/f_val_calc_p.Rd man/f_val_calc_pc_using_complex_Delta_full_model.Rd man/f_val_calc_pc_using_complex_Delta_no_decarboxylation.Rd man/f_val_calc_pc_using_gm.Rd man/f_val_calc_pc_using_simple_Delta_for_gm.Rd man/f_val_calc_pc_using_simple_Delta_for_modeling.Rd man/f_val_calc_pp.Rd man/f_val_calc_total_mol_fraction_CO2.Rd man/f_val_calc_xi.Rd man/fix_missing_TDL_values.Rd man/get_Licor.Rd man/interp_TDL_tanks_ref.Rd man/isogasex.Rd man/isogasex_logo.Rd man/last_TDL_index_for_means.Rd man/move_plot_files.Rd man/my_reg_fit.Rd man/my_reg_pred.Rd man/plot_A_photosynthesis.Rd man/plot_Ca_Cs.Rd man/plot_Cc_total.Rd man/plot_Ci_pi.Rd man/plot_Delta_i.Rd man/plot_Licor_flow_press.Rd man/plot_Licor_temp_light.Rd man/plot_corrected_total_diff_xi.Rd man/plot_data_cycles.Rd man/plot_delta_Delta_p.Rd man/plot_gain_offset.Rd man/plot_gbc_gsc_gtc.Rd man/plot_gm.Rd man/plot_not_na.Rd man/plot_pa_ps.Rd man/plot_pc_simple_complex.Rd man/plot_pc_total.Rd man/plot_pi_pa.Rd man/plot_val_calc_sum.Rd man/progress_time.Rd man/read_TDL.Rd man/read_template_param.Rd man/read_template_param_table_to_raw.Rd man/s_plot_settings_begin_end.Rd man/set_TDL_cycle.Rd man/time_window_TDL_Licor_interp.Rd man/val_TDL_Licor_variables.Rd man/write_CI_Calc_file.Rd man/write_CI_Licor_file.Rd man/write_CI_TDL_file.Rd man/write_all_Calc_file.Rd man/write_out.Rd man/write_progress.Rd man/write_summary_Calc_file.Rd man/write_summary_Licor_file.Rd man/write_summary_TDL_file.Rd man/x_wo_y.Rd vignettes/isogasex_user_guide.Rmd vignettes/tex_doc/Schematic_TDL-Licor2.pdf vignettes/tex_doc/tdllicor_documentation.pdf