long_markers: A long format way of specifying markers.
In eriqande/CKMRsim: Inference of Pairwise Relationships Using Likelihood Ratios
long_markers R Documentation
A long format way of specifying markers.
Description
This is a tibble that provides an example of how to
specify markers. This is particularly useful for pumping stuff into Mendel.
And it is way easier than having everything in a big named list.
Usage
long_markers
Format
A data frame with necessary columns:
- Chrom
The name of the chromosome. This should always be an integer (or maybe "X" or "Y")
- Locus
The name of the locus. This can be any string.
- Pos
The position of the locus in bases along the chromosome.
- Allele
The name of allele. Any string is OK
- Freq
The frequency of the allele in the population
- AlleIdx
The index of the allele. These have to go from 1 up to the number of
alleles at the locus. Order is immaterial.
- LocIdx
The index of the locus within the chromosome. This goes from 1 up to the
number of loci on the chromosome. These should be ordered according to Pos
eriqande/CKMRsim documentation built on Aug. 2, 2024, 7:23 a.m.
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| long_markers | R Documentation |
A long format way of specifying markers.
Description
This is a tibble that provides an example of how to specify markers. This is particularly useful for pumping stuff into Mendel. And it is way easier than having everything in a big named list.
Usage
long_markers
Format
A data frame with necessary columns:
- Chrom
The name of the chromosome. This should always be an integer (or maybe "X" or "Y")
- Locus
The name of the locus. This can be any string.
- Pos
The position of the locus in bases along the chromosome.
- Allele
The name of allele. Any string is OK
- Freq
The frequency of the allele in the population
- AlleIdx
The index of the allele. These have to go from 1 up to the number of alleles at the locus. Order is immaterial.
- LocIdx
The index of the locus within the chromosome. This goes from 1 up to the number of loci on the chromosome. These should be ordered according to Pos
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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