Files in eriqande/HatcheryPedAgree
.Rbuildignore
.gitignore
DESCRIPTION
HatcheryPedAgree.Rproj
NAMESPACE
R/base_plot.R
R/compile_pedigree_sex_issues.R
R/count_discrepancies.R
R/data.R
R/find_matching_samples.R
R/genos2rubias.R
R/import.R
R/partition_two_snppit_results.R
R/prep_to_compare_snippit_runs.R
R/prepare_snppit_infile.R
R/reformat_no_sex_or_date_results.R
R/reorganize_matching_samples.R
R/run_snippit.R
R/slurp_snppit.R
README.Rmd
README.md
data/coho_genotypes.rda
data/coho_metadata.rda
data/ped_with_sex_issues.rda
development/.gitignore
development/compare-HPA-to-Anne-previous-results.Rmd
development/data/HPA_final_data_test_July132020.rds
development/debugging_stuff/anne-probs-with-hatchery-specs-in-reorg.R
development/developing-sex-inference.Rmd
development/developing-snppit-run-comparisons.Rmd
development/development-itinerary.Rmd
development/squash-laura-data.R
development/typical-analysis-CV-no-salvage.Rmd
development/typical-analysis-CV.Rmd
development/typical-analysis-RR.Rmd
development/typical-analysis.Rmd
development/working-on-noSAD-reformat.R
inst/bin/snppit-Darwin
man/base_plot.Rd
man/coho_genotypes.Rd
man/coho_metadata.Rd
man/compile_pedigree_sex_issues.Rd
man/count_discrepancies.Rd
man/find_matching_samples.Rd
man/genos2rubias.Rd
man/partition_two_snppit_results.Rd
man/prep_to_compare_snppit_runs.Rd
man/prepare_snppit_infile.Rd
man/reformat_no_sex_or_date_results.Rd
man/reorganize_matching_samples.Rd
man/run_snppit.Rd
man/slurp_snppit.Rd
too_big_vignettes/.gitignore
too_big_vignettes/example-analysis-central-valley.Rmd
too_big_vignettes/example-analysis-russian-river.Rmd
tutorial/.gitignore
tutorial/using-partition_two_snppit_runs.Rmd
