Man pages for eriqande/SNPcontam
Detecting contaminated samples from SNP genotypes
| analyze_MCMC | MCMC function for determing contamination probability and... |
| cdfg_port_samples | Chinook genotype data from 1974 individuals sampled by CA... |
| likelihood | Probability of genotype given contamination and... |
| mixed_MCMC | MCMC function for determing contamination proportions and... |
| Pcontam | Compute likelihoods for populations of origin |
| P_likelihood | Compute likelihoods for populations of origin |
| prepare_base_and_mix_for_mixed_MCMC | Prepares a baseline and mixture file of genotypes for mixed... |
| SNPcontam | Detecting contaminated samples from SNP genotypes |
| swfsc_chinook_baseline | Chinook genotype data from 8031 individuals across much of... |
