Detecting contaminated samples from SNP genotypes

analyze_MCMC | MCMC function for determing contamination probability and... |

cdfg_port_samples | Chinook genotype data from 1974 individuals sampled by CA... |

likelihood | Probability of genotype given contamination and... |

mixed_MCMC | MCMC function for determing contamination proportions and... |

Pcontam | Compute likelihoods for populations of origin |

P_likelihood | Compute likelihoods for populations of origin |

prepare_base_and_mix_for_mixed_MCMC | Prepares a baseline and mixture file of genotypes for mixed... |

SNPcontam | Detecting contaminated samples from SNP genotypes |

swfsc_chinook_baseline | Chinook genotype data from 8031 individuals across much of... |

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