README.md

In eriqande/snps2assays: Prepare SNP Assay Orders from ddRAD or RAD Loci

snps2assays

This is an R-package to help prepare Fluidigm SNPtype assays (or similar assays) from reduced-representation library loci (for example ddRAD or RAD loci). You pass in a data frame of variable sites, a data frame of desired SNPs, and a data frame of the consensus sequences of each ddRAD or RAD locus, and it returns the information needed to order the assays.

Installing

You can install this directly from GitHub using Hadley Wickham's devtools package:

devtools::install_github("eriqande/snps2assays", build_vignettes = TRUE)

Once you have it installed, try the usual suspects to learn about the package. Some useful entry points will be:

vignette("snps2assays")

package?snps2assays

help(package = "snps2assays")

?assayize

Terms

As a work of the United States Government, this package is in the public domain within the United States. Additionally, we waive copyright and related rights in the work worldwide through the CC0 1.0 Universal public domain dedication.

See TERMS.md for more information.

eriqande/snps2assays documentation built on Oct. 9, 2020, 5:22 p.m.