barplot_go: Bar plot for gene ontology visualization.

In erkutilaslan/biovizR: A Package to Visualize Biological Data Designed for Wet Lab Scientists.

Bar plot for gene ontology visualization.

Description

This function visualizes gene ontology results from ClueGO as bar plot.

Usage

barplot_go(
  go_data,
  type = "cluego",
  top = "50",
  go_process = "",
  min_genes = "",
  header = ""
)

Arguments

go_data	Input GO data to visualize.
type	Default cluego. Parameter to specify input data source.
top	Default value is 50. Parameter to set top number of processes to be visualized.
go_process	Turned off by default. Parameter to add a specific keyword to only visuzalize GO terms that contains it.
min_genes	Turned off by default. Parameter to set threshold for biological processes containing minimum number of genes.
header	Set a title for the barplot.

Value

A bar plot of gene ontology results.

erkutilaslan/biovizR documentation built on June 18, 2022, 6:22 p.m.