maplot_dge: MA-plot visualization of DGE analysis.
In erkutilaslan/biovizR: A Package to Visualize Biological Data Designed for Wet Lab Scientists.
maplot_dge R Documentation
MA-plot visualization of DGE analysis.
Description
This function visualizes DGE results as an MA-plot.
Usage
maplot_dge(
dge_data,
FDR = 0.01,
FC = 0.5,
TOP = 10,
type = "deseq2",
header = ""
)
Arguments
dge_data
Path to the input file.
FDR
Default 0.01. Adjust FDR value.
FC
Default 0.5. Adjust log2FC threshold.
TOP
Default 10. Adjust top number of DE genes to visualize.
type
Default deseq2. Specify input datatype.
header
Default is empty. Set a title for the MA-plot.
Value
An ma-plot of RNA-Seq DGE data.
erkutilaslan/biovizR documentation built on June 18, 2022, 6:22 p.m.
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| maplot_dge | R Documentation |
MA-plot visualization of DGE analysis.
Description
This function visualizes DGE results as an MA-plot.
Usage
maplot_dge( dge_data, FDR = 0.01, FC = 0.5, TOP = 10, type = "deseq2", header = "" )
Arguments
dge_data |
Path to the input file. |
FDR |
Default 0.01. Adjust FDR value. |
FC |
Default 0.5. Adjust log2FC threshold. |
TOP |
Default 10. Adjust top number of DE genes to visualize. |
type |
Default deseq2. Specify input datatype. |
header |
Default is empty. Set a title for the MA-plot. |
Value
An ma-plot of RNA-Seq DGE data.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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