API for etaijacob/MAPDB
PDB/Uniprot/Pfam single and multiple sequences mapping
| Global functions | |
|---|---|
| MAPDB | Man page |
| PDBs2Pfam | Man page Source code |
| choose_PDBs_for_a_pfamid | Man page Source code |
| getAtomListByResno | Source code |
| get_PFAM2PDB_pairwise_distances_between_anyAtom_Ca_Cb | Source code |
| get_UNIPROT2PDB_pairwise_distances_between_anyAtom_Ca_Cb | Source code |
| get_minimal_pairwise_dist_between_atoms_Ca_Cb | Source code |
| get_pdb_atom_coordinates | Source code |
| get_pdbs_for_uniprotID | Source code |
| get_uniprot_entry_names_and_ids_from_pfam_sth_file | Source code |
| hmmer_pdb_all | Man page |
| map_all_PDB_structures_to_pfam_sth_file_using_anyAtom_Ca_Cb | Source code |
| map_all_PDB_structures_to_uniprot_fasta_file_using_anyAtom_Ca_Cb | Source code |
| pdbUniprot | Man page |
| read.fasta.alignment | Source code |
| read.stockholm.alignment | Source code |
