PDBs2Pfam: Map all known PDB residues' coordinates to an Pfam STH file.

Description Usage Arguments Value Examples

Description

Map all known PDB residues' coordinates to an Pfam STH file.

Usage

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PDBs2Pfam(pfamid, pfamSthFile = NA, sth.local.db = "data-raw/STH/",
  pfamseqResource = "rp75", ...)

Arguments

pfamid

A Pfam id string

pfamSthFile

A pfam sth file for pfamid.

sth.local.db

A path to a local pfam database or temporary directory to save downloaded sth files.

pfamseqResource

A sequence redundancy level as inidcated in Pfam - relevant when downloading the sth file.

Value

A map of all known PDB residues to the msa file by PDB chain.

Examples

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myPfamMap <- PDBs2Pfam("PF00075")

etaijacob/MAPDB documentation built on May 16, 2019, 8:54 a.m.