MAPDB provides an easy way to map all known PDB chains to an STH or fasta MSA file.
This package is used to calculate the accuracy of contact predictions based on MSA data. If you use this package please cite:
Etai Jacob, Ron Unger and Amnon Horovitz (2015). Codon-level information improves predictions of inter-residue contacts in proteins by correlated mutation analysis. eLife 2015;10.7554/eLife.08932 URL http://dx.doi.org/10.7554/eLife.08932. It has two main functions:
Map all known PDB residues' coordinates to an Pfam STH file
Map all known PDB residues' coordinates to a fasta file (partially supported at this version)
To learn more about MAPDB, start with the vignettes:
browseVignettes(package = "MAPDB")
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