MAPDB: MAPDB: A package for mapping Pfam multiple sequence alignment...

Description Details


MAPDB provides an easy way to map all known PDB chains to an STH or fasta MSA file.


This package is used to calculate the accuracy of contact predictions based on MSA data. If you use this package please cite:

Etai Jacob, Ron Unger and Amnon Horovitz (2015). Codon-level information improves predictions of inter-residue contacts in proteins by correlated mutation analysis. eLife 2015;10.7554/eLife.08932 URL It has two main functions:

To learn more about MAPDB, start with the vignettes: browseVignettes(package = "MAPDB")

etaijacob/MAPDB documentation built on May 16, 2019, 8:54 a.m.