MAPDB: MAPDB: A package for mapping Pfam multiple sequence alignment...
In etaijacob/MAPDB: PDB/Uniprot/Pfam single and multiple sequences mapping
Description
MAPDB provides an easy way to map all known PDB chains to an STH or fasta MSA file.
Details
using this package requires an interent connection. If more then several examples are required,
you should consider downloading first PDB and STH databases.
This package can be used, for example, to calculate the accuracy of contact predictions based on MSA data.
If you use this package please cite:
Etai Jacob, Ron Unger and Amnon Horovitz (2015). Codon-level information improves predictions of inter-residue contacts
in proteins by correlated mutation analysis.
eLife 2015;10.7554/eLife.08932 URL http://dx.doi.org/10.7554/eLife.08932.
It has two main functions:
Map all known PDB residues' coordinates to a Pfam STH file
Map all known PDB residues' coordinates to a fasta file (partially supported at this version)
To learn more about MAPDB, start with the vignettes:
browseVignettes(package = "MAPDB")
etaijacob/MAPDB documentation built on Dec. 10, 2019, 1:01 p.m.
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description
MAPDB provides an easy way to map all known PDB chains to an STH or fasta MSA file.
Details
using this package requires an interent connection. If more then several examples are required, you should consider downloading first PDB and STH databases.
This package can be used, for example, to calculate the accuracy of contact predictions based on MSA data. If you use this package please cite:
Etai Jacob, Ron Unger and Amnon Horovitz (2015). Codon-level information improves predictions of inter-residue contacts in proteins by correlated mutation analysis. eLife 2015;10.7554/eLife.08932 URL http://dx.doi.org/10.7554/eLife.08932. It has two main functions:
Map all known PDB residues' coordinates to a Pfam STH file
Map all known PDB residues' coordinates to a fasta file (partially supported at this version)
To learn more about MAPDB, start with the vignettes:
browseVignettes(package = "MAPDB")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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